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MetabolomicsAdaptive laboratory evolution of microbial co-cultures for improved metabolite secretion

Adaptive laboratory evolution has proven highly effective for obtaining microorganisms with enhanced capabilities. Yet, this method is inherently restricted to the traits that are positively linked to cell fitness, such as nutrient utilization. Here, we introduce coevolution of obligatory mutuali...

2021-07-02 | MTBLS2217 | MetaboLights
MetabolomicsEnhanced photosynthetic CO2 fixation in mutualistic Chlorella sp. and Mesorhizobium loti co-cultures

It was further confirmed the stimulatory effect of M. loti-derived eCA on microalgae, highlighting key carbon metabolic pathways, including the Calvin cycle, TCA cycle and antioxidant defense response.

2025-01-20 | MTBLS11422 | MetaboLights
MetabolomicsEvaluation of extraction solvents for untargeted metabolomics analysis of enrichment reactor cultures performing enhanced biological phosphorus removal (EBPR)

INTRODUCTION: The extraction solvent mixtures were optimized for untargeted metabolomics analysis of microbial communities from two laboratory scale activated sludge reactors performing enhanced biological phosphorus removal (EBPR).

OBJECTIVE: To develop a ...

2019-08-16 | MTBLS884 | MetaboLights
MetabolomicsWT and ΔSPT cultures of B. thetaiotaomicron grown in Minimal Media (part II)
Not available
ORGANISM(S): Bacteroides thetaiotaomicron VPI-5482 
ST001126 | MetabolomicsWorkbench
MetabolomicsWT and ΔSPT cultures of B. thetaiotaomicron and B. ovatus grown BHI liquid media (part I)
Not available
ORGANISM(S): Bacteroides thetaiotaomicron VPI-5482;Bacteroides ovatus ATCC 8483 
ST001125 | MetabolomicsWorkbench
MetabolomicsWT and ΔSPT cultures of B. thetaiotaomicron grown in Minimal Media with or without d4-alanine (part IV)
Not available
ORGANISM(S): Bacteroides thetaiotaomicron VPI-5482 
ST001128 | MetabolomicsWorkbench
TranscriptomicsA Comparative Study of Genome Wide Transcriptional Profiles of Primary Hepatocyte in In Vitro Cultures
The liver is one of most important organs in our bodies. It performs many essential functions including metabolism, synthesis, secretion, detoxification, and storage. Hepatocytes are the principal cell type in the liver and are involved in multiple liver-specific functions. There have been several e...
ORGANISM(S): Rattus norvegicus 
2010-06-08 | E-GEOD-20659 | biostudies-arrayexpress
MetabolomicsMetabolic Profiling of Volatile Organic Compounds (VOCs) Emitted by the Pathogens Francisella tularensis and Bacillus anthracis in Liquid Culture
We conducted comprehensive (untargeted) metabolic profiling of volatile organic compounds (VOCs) emitted in culture by bacterial taxa Francisella tularensis (F. tularensis) subspecies novicida and Bacillus anthracis (B. anthracis) Sterne, surrogates for potential bacterial bioterrorism agents, as we...
2020-08-20 | MTBLS1737 | MetaboLights
GenomicsHexadecene Cultures
Enrichment cultures degrading hexadecene
PRJEB22083 | ENA
TranscriptomicsRNA-seq for Thermotoga maritima MSB8 glucose evolved cultures
RNA-seq was performed on T. maritima wild type, three glucose evolved cultures, and three glycerol adapted cultures. Wild type and glucose evolved strains were grown on glucose minimal media and glycerol evolved cultures were grown on glycerol minimal media. All samples were harvested in exponential...
ORGANISM(S): Thermotoga maritima MSB8 
2015-06-09 | E-GEOD-63141 | biostudies-arrayexpress
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