depolymerase - OmicsDI

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Transcriptomics (3924)
Unknown (271)
Genomics (186)
Proteomics (16)
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Organisms

Homo sapiens (1193)
Mus musculus (934)
Rattus norvegicus (119)
Arabidopsis thaliana (119)
Drosophila melanogaster (103)
Saccharomyces cerevisiae (88)
Thermus thermophilus HB8 (71)
Streptococcus pneumoniae D39 (56)
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Oryza sativa (12)

Organisms

Klebsiella phage P13 (2)
plastic metagenome (2)
Klebsiella pneumoniae (2)
Mus musculus (2)
Homo sapiens (2)
Streptomyces sp. Act 2 (1)
Burkholderia vietnamiensis (1)
unclassified bacterial viruses (1)
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Caenorhabditis elegans (1)

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Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
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Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
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Limited cutaneous subset (1)

Technology Type

Mass Spectrometry (7)
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Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
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Illumina HiSeq 2000, ILLUMINA (1)
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Metaproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (93)
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Illumina HiSeq 2500 (61)
Illumina HiSeq 4000 (50)
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Maxwell® AS2000 instrument (2)

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2014 (468)
2015 (465)
2012 (438)
2011 (388)
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2009 (150)
2007 (76)
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2023 (69)
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2018 (59)
2022 (58)
2019 (56)
2020 (48)
2006 (42)
2026 (17)
2025 (8)
2004 (4)
2003 (3)

CHEBI ID

CHEBI:139454 (1)
CHEBI:192344 (1)
CHEBI:192343 (1)
CHEBI:192339 (1)
CHEBI:192338 (1)
CHEBI:192336 (1)
CHEBI:192334 (1)
CHEBI:173584 (1)
CHEBI:192332 (1)
CHEBI:192331 (1)
CHEBI:192330 (1)
CHEBI:192325 (1)
CHEBI:174892 (1)
CHEBI:192324 (1)
CHEBI:192323 (1)
CHEBI:192321 (1)
CHEBI:192319 (1)
CHEBI:174240 (1)
CHEBI:192316 (1)
CHEBI:192315 (1)
CHEBI:174866 (1)
CHEBI:175163 (1)
CHEBI:89595 (1)
CHEBI:175696 (1)
CHEBI:192310 (1)
CHEBI:192308 (1)
CHEBI:192307 (1)
CHEBI:192301 (1)
CHEBI:174870 (1)
CHEBI:192299 (1)

Metabolite Name

Succinyldihydrolipoamide (1)
Ethyl methyl trisulfide (1)
Xi-1-(Propylthio)-1-propanethiol (1)
3-(2,4-Dihydroxyphenyl)-8,9-dihydro-5-hydroxy-8-(1-methylethenyl)-4H-furo[2,3-h]-1-benzopyran-5-one (1)
3',7-Dimethoxy-4',5,8-trihydroxyflavone 8-glucoside (1)
Rutaretin (1)
3',4',5-Trihydroxy-3,7-dimethoxyflavone 5-glucoside (1)
P-Mentha-1,8-dien-7-ol (1)
Artomunoxanthentrione epoxide (1)
17-Hydroxy-9,11,13,15-octadecatetraynoic acid (1)
Lathycarpin (1)
Glycyrrhizaisoflavone B (1)
Secodemethylclausenamide (1)
5,7-Dihydroxy-4'-methoxy-8-methylisoflavanone (1)
9-O-Methylglyceofuran (1)
Moracin K (1)
Licoflavonol (1)
3-(Methylthio)-1-propene (1)
(2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enal (1)
1,5-Bis(4-hydroxy-3-methoxyphenyl)-1,4-pentadien-3-one (1)
Beta-Vatirenene (1)
Glycyrrhizaisoflavone C (1)
Bismurrayaquinone A (1)
5-Methyl-2,5-di-1-pyrrolidinyl-2-cyclopenten-1-one (1)
5,7-dihydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-4H-chromen-4-one (1)
Methylnissolin (1)
PS(16:1(9Z)/16:1(9Z)) (1)
AS 1-2 (1)
DG(22:5(7Z,10Z,13Z,16Z,19Z)/18:1(11Z)/0:0) (1)
PE(P-16:0/14:0) (1)

First Public Date

2025 (9)
2024 (7)
2023 (6)
2026 (5)
2022 (3)
2021 (1)
2018 (1)
2016 (1)
2015 (1)
2014 (1)

Classification

viruses (3)
bacteria (3)

Study type

Transcription profiling by array (2721)
RNA-seq of coding RNA (652)
ChIP-seq (120)
RNA-seq of coding RNA from single cells (68)
Transcription profiling by tiling array (63)
Other (53)
Comparative genomic hybridization by array (51)
RNA-seq of non coding RNA (46)
ChIP-chip by tiling array (39)
Unknown experiment type (35)
Transcription profiling by RT-PCR (33)
RNA-seq of total RNA (26)
ChIP-chip by array (19)
Methylation profiling by high throughput sequencing (18)
ATAC-seq (12)
Animal - High-throughput sequencing (11)
Cell line - High-throughput sequencing (11)
High-throughput sequencing (10)
RNAi profiling by array (10)
Genotyping by array (9)
MicroRNA profiling by array (8)
RIP-seq (4)
DNA-seq (4)
Transcription profiling by SAGE (3)
Tiling path by array (3)
Human - High-throughput sequencing (3)
Cell line - One-color microarray (3)
Plant - One-color microarray (3)
Ribo-seq (3)
Methylation profiling by array (3)

Release Date

2013 (541)
2010 (511)
2015 (474)
2014 (472)
2012 (445)
2011 (393)
2016 (300)
2008 (163)
2009 (154)
2023 (100)
2021 (89)
2024 (79)
2007 (79)
2022 (76)
2005 (76)
2017 (74)
2019 (73)
2018 (69)
2020 (61)
2006 (45)
2025 (40)
2026 (18)
2004 (8)
2003 (7)
2000 (3)
2001 (1)
1999 (1)
1998 (1)

Lab affiliation

Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany (1)
Department of Chemistry, Yale University, New Haven, CT, USA (1)
Institute of Human Nutrition and Food Science, Department of Metabolomics, University of Kiel, Germany Max Planck Institute for Marine Microbiology, Bremen, Germany (lab head) (1)
Institute of Molecular Biology, Mainz, Germany (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
NO.2 Yabao Road, Beijing Province (1)
Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, UK Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, German (1)

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Phage and depolymerase

depolymerase

PRJEB50670 | ENA

Phage depolymerase modulates virulence and biofilm in hypervirulent Klebsiella pneumoniae by CPS-mediated suppression of type 3 fimbriae

Phage-derived depolymerases represent a promising antibiotic alternative for treating Klebsiella pneumoniae infections. Depolymerases can increase the sensitivity of bacteria to the host immune system and complement-mediated killing by specifically degrading capsular polysaccharides (CPS). However, ...

ORGANISM(S): Homo sapiens (Human) Klebsiella pneumoniae

2026-06-28 | PXD080233 | Pride

MS-analysis of pull downs to elucidate putative transcriptional regulators from phasin and depolymerase genes

LC-MS/MS analysis of promoter pull-down assays with crude protein extracts from R. eutropha Re2058/pCB113, to identify putative transcriptional regulators involved in the expression control of PHA metabolism, specifically targeting phasin phaP1 and depolymerase phaZ3 and phaZ5 genes.

ORGANISM(S): Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)

2024-10-17 | PXD050193 | Pride

Lc-msms Ralstonia eutropha

Poly(3-hydroxyvalerate) depolymerase of Pseudomonas lemoignei.

Not available

S-EPMC91997 | biostudies-literature

Cell Surface Display of Poly(3-hydroxybutyrate) Depolymerase and its Application.

Not available

S-EPMC9728289 | biostudies-literature

Aeromonas punctata derived depolymerase improves susceptibility of Klebsiella pneumoniae biofilm to gentamicin.

Not available

S-EPMC4461996 | biostudies-literature