Lc-msms - OmicsDI

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Proteomics (3997)
Metabolomics (195)
Other (111)
Unknown (67)
Transcriptomics (39)
Multiomics (8)
Genomics (5)

Organisms

Homo sapiens (252)
Mus musculus (96)
Escherichia coli (12)
Arabidopsis thaliana (9)
Rattus norvegicus (8)
Rattus rattus (6)
Penicillium oxalicum 114-2 (5)
Saccharomyces cerevisiae (4)
Drosophila melanogaster (4)
Bos taurus (3)
Danio rerio (3)
Sus scrofa domesticus (3)
Aeromonas hydrophila subsp. hydrophila ATCC 7966 (3)
Trichoderma reesei QM6a (2)
Aspergillus nidulans (1)
Salmonella enterica subsp. enterica serovar Enteritidis (1)
Tetranychus urticae (1)
Aspergillus fumigatus (1)
Zea mays (1)
Oryza sativa (1)
Metabacillus indicus (1)
Microbispora corallina (1)
Sternaspis chinensis (1)
Dendrobium nobile (1)
Klebsiella pneumoniae ATCC 43816 (1)
Suid alphaherpesvirus 1 (1)
Bacteroides fragilis (1)
Enterococcus casseliflavus (1)
Klebsiella aerogenes (1)
Citrobacter freundii complex (1)

Repository

pride (2688)
MassIVE (846)
jPOST (310)
MetaboLights (161)
iProX (119)
GPMDB (46)
biostudies-arrayexpress (44)
PeptideAtlas (44)
GNPS (34)
PanoramaPublic (34)
PAXDB (17)
ENA (3)
LINCS (1)

Tissue

Cell culture (607)
Epithelial cell (171)
Brain (115)
Permanent cell line cell (113)
Fibroblast (67)
Liver (67)
Plant cell (66)
Blood plasma (66)
Leaf (66)
Blood (57)
Lung (50)
Cell suspension culture (49)
Whole body (48)
Macrophage (45)
B cell (43)
Blood cell (38)
Bone marrow (37)
Hepatocyte (37)
Heart (36)
Kidney (36)
Blood serum (35)
HeLa cell (33)
Colon (32)
T cell (32)
Skin (29)
Embryonic stem cell (26)
Others (23)
Brain (2)
Lung (1)
Prefrontal Cortex (1)

Disease

Disease free (83)
Breast cancer (66)
Not Available (46)
Acute leukemia (38)
Colon cancer (36)
Parkinson's disease (18)
Cervix carcinoma (16)
Lymphoma (15)
Multiple myeloma (14)
Acute myeloid leukemia (14)
Brain cancer (14)
Type 2 diabetes mellitus (14)
Trypanosomiasis (13)
Melanoma (11)
Cardiovascular system disease (11)
Prostate adenocarcinoma (9)
Neuroblastoma (9)
Malaria (9)
Amyotrophic lateral sclerosis (9)
Malignant neoplasm of ovary (9)
Non-small cell lung carcinoma (8)
Pancreatic ductal adenocarcinoma (8)
Pancreatic cancer (8)
Hepatocellular carcinoma (7)
Wounds and Injuries (7)
Severe acute respiratory syndrome (6)
Lung adenocarcinoma (6)
Chronic myeloid leukemia (6)
Non-small Cell Lung Carcinoma (1)
Alzheimer's Disease (1)

Technology Type

Mass Spectrometry (2688)
Shotgun proteomics (1476)
Bottom-up proteomics (469)
Affinity purification coupled with mass spectrometry proteomics (357)
Data-dependent acquisition (274)
Gel-based experiment (244)
Data-independent acquisition (139)
Top-down proteomics (91)
Mass spectrometry (88)
Mass spectrometry assay (72)
SWATH MS (71)
Chemical cross-linking coupled with mass spectrometry proteomics (31)
SRM/MRM (24)
DiaPASEF (16)
Affinity proteomics (10)
All-ion fragmentation (9)
Proteogenomics (8)
MSE (8)
Immunopeptidomics (7)
Metaproteomics (4)
Mass spectrometry imaging (4)
RNA mass spectrometry (3)
HDMSE (3)
NMR spectroscopy (2)
Shotgun-MS (1)
Mass spectrometry (1)
PAcIFIC (1)

Instrument Platform

Q Exactive (174)
Orbitrap Fusion Lumos (102)
LTQ Orbitrap Velos (80)
Orbitrap Fusion (64)
Q Exactive HF (59)
Q Exactive Plus (59)
Instrument (46)
LTQ Orbitrap Elite (40)
LTQ Orbitrap (37)
Orbitrap Eclipse (29)
Q Exactive HF-X (27)
Orbitrap Exploris 480 (24)
TripleTOF 5600 (21)
TripleTOF 6600 (15)
MaXis (12)
Impact II (12)
Impact (8)
MicrOTOF-Q II (8)
Orbitrap Exploris 240 (7)
Orbitrap ID-X (5)
Q-Exactive (5)
6545 Q-TOF LC/MS (3)
Illumina HiSeq 3000 (2)
LTQ Orbitrap velos pro ETD (Thermo Scientific Instrument model) (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
6545 Quadrupole Time-of-Flight LC/MS (Agilent Model) (1)
Q Exactive Focus Orbitrap (1)
LCQ Fleet (1)

Publication Date

2025 (525)
2022 (503)
2023 (495)
2024 (476)
2021 (399)
2020 (338)
2026 (325)
2019 (270)
2018 (241)
2017 (174)
2016 (137)
2014 (103)
2015 (91)
2013 (42)
2012 (12)
2009 (8)
2010 (7)
2011 (2)
2008 (2)
2006 (2)
2005 (1)
2003 (1)

UNIPROT ID/AC

H2B1D_HUMAN (4)
UBB_HUMAN (4)
ALBU_HUMAN (4)
K2C4_HUMAN (4)
KAP0_HUMAN (4)
GALT2_HUMAN (4)
EF1G_HUMAN (4)
PGAM1_HUMAN (4)
PSA4_HUMAN (4)
IF4A1_HUMAN (4)
H2AJ_HUMAN (4)
MDHC_HUMAN (4)
FAM3C_HUMAN (4)
TRFL_HUMAN (4)
A4_HUMAN (4)
HS90B_HUMAN (4)
PSB1_HUMAN (4)
MYH3_HUMAN (4)
SPTN1_HUMAN (4)
G6PI_HUMAN (4)
LEG3_HUMAN (4)
POTEJ_HUMAN (4)
TCPB_HUMAN (4)
TPIS_HUMAN (4)
TITIN_HUMAN (4)
K1C10_HUMAN (4)
1433B_HUMAN (4)
RAB15_HUMAN (4)
IF2B_HUMAN (4)
G3P_HUMAN (4)

ENSEMBL ID

ENSG00000170477 (25)
ENSG00000229353 (5)
ENSG00000247315 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:17596 (25)
CHEBI:16704 (24)
CHEBI:16750 (23)
CHEBI:17562 (22)
CHEBI:15891 (21)
CHEBI:16919 (21)
CHEBI:16040 (20)
CHEBI:16335 (20)
CHEBI:17368 (20)
CHEBI:15354 (19)
CHEBI:16708 (19)
CHEBI:16566 (18)
CHEBI:17775 (18)
CHEBI:18211 (18)
CHEBI:16393 (17)
CHEBI:17750 (17)
CHEBI:17568 (17)
CHEBI:30915 (17)
CHEBI:17154 (17)
CHEBI:16914 (16)
CHEBI:15760 (16)
CHEBI:16020 (16)
CHEBI:15741 (16)
CHEBI:16737 (16)
CHEBI:24813 (15)
CHEBI:17992 (15)
CHEBI:17895 (15)
CHEBI:68433 (15)
CHEBI:7916 (15)
CHEBI:30769 (15)

Metabolite Name

Adenosine (31)
Guanosine (31)
Spermidine (28)
Creatine (28)
Oleamide (26)
Indole (25)
L-Tyrosine (24)
Hypoxanthine (24)
Adenine (24)
L-Histidine (24)
Taurine (24)
L-Phenylalanine (24)
Inosine (24)
Guanine (23)
Choline (23)
Betaine (22)
L-Tryptophan (22)
L-Carnitine (22)
Cytidine (22)
Uridine (22)
Phytosphingosine (21)
Pantothenic acid (21)
Sphinganine (21)
Cytosine (21)
L-Proline (21)
Sphingosine (20)
Riboflavin (20)
Thymidine (20)
Uracil (19)
L-Arginine (19)

First Public Date

2025 (1)
2022 (1)
2014 (1)

Modification

15.994915 (14)
57.021464 (12)
2x(15)N labeled L-lysine (10)
-17.026549 (8)
42.010565 (8)
4x(15)N labeled L-arginine (8)
4 (5)
45.029395 (4)
N6 (4)
6.020129 (3)
71.037114 (3)
4-tetrahydrothiazine-3-carboxylic acid (3)
10.008269 (2)
Not available (2)
26.01565 (1)
Methionine (1)
31.989829 (1)
0.984016 (1)
79.966331 (1)
3'' (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(2)H labeled dimethylated residue (1)
-18.010565 (1)
58.005479 (1)
6x(2)H labeled dimethylated L-arginine (1)
57.02146 (1)
15.99491 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (7)
Proteomic profiling by mass spectrometer (3)
ChIP-seq (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2021 (13)
2019 (10)
2024 (10)
2009 (9)
2016 (7)
2014 (7)
2010 (7)
2020 (7)
2012 (6)
2023 (5)
2015 (5)
2022 (5)
2017 (5)
2011 (4)
2025 (4)
2013 (3)
2008 (2)
2006 (1)
2018 (1)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (23)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (22)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (18)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (12)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Proteomics Core Facility, School of Science, National and Kapodistrian University of Athens, Athens, Greece (9)
Brigham and Women's Hospital, Harvard Medical School (8)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
Wellcome Trust Sanger Institute (7)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (6)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
Forest Products Laboratory, Institute for Microbial and Biochemical Sciences, USDA (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (6)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (5)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
Dept. Proteomics and Signal Transduction Director at the Max-Planck Institute of Biochemistry (5)
Biochemistry (5)
ETH Zürich Institute of Molecular Systems Biology HPM F43 Otto-Stern-Weg 3 8093 Zürich Switzerland (5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (5)
Center for Reproductive Evolution, Biology Department, Syracuse University (5)
Max Planck Institute for Molecular Biomedicine Bioanalytical Mass Spectrometry Röntgenstr. 20 48149 Münster Germany (5)
University of Manchester (5)
University of Bristol (5)
University of Liverpool (5)
BMI, Faculty of Medicine, University of Ottawa, Canada (5)

Tags

xref:PubMed:19536202 (1)

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ABRF PRG 2012: Longitudinal QC in Routine Peptide LC-MS/MS Analyses

Questions concerning data quality and reproducibility of proteomic laboratories spurred the ABRF-PRG group to design a study to systematically assess the reproducibility of proteomic laboratories. Sixty four participants were recruited from the broader mass spectrometry community and were asked to ...

ORGANISM(S): Bos Taurus (ncbitaxon:9913)

2015-04-28 | MSV000079117 | MassIVE

Lactulose: mannitol diagnostic test by HPLC and LC-MSMS platforms: considerations for field studies of intestinal barrier function and environmental enteropathy.

Not available

S-EPMC4222705 | biostudies-literature

LC-MSMS based screening of emerging pollutant degradation by different peroxidases.

Not available

S-EPMC6883607 | biostudies-literature

Development and validation of an LC-MSMS method to quantify creatinine from dried blood spots.

Not available

S-EPMC10950697 | biostudies-literature

Dilute, derivatise and shoot: Measurement of urinary free metanephrines and catecholamines as ethyl derivatives by LC-MSMS.