fba - OmicsDI

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Organisms

Streptococcus pyogenes (3)
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rhizosphere metagenome (1)
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biostudies-arrayexpress (71)
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MSE (2)
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Instrument Platform

Liquid Chromatography MS - negative - hilic (4)
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2006 (3)
2018 (2)
2017 (1)

UNIPROT ID/AC

Q01813 (3)
P17858 (3)
P05062 (3)
P09972 (3)
P04075 (3)
P07738 (3)
P00338 (3)
P07195 (3)
P14618 (3)
P04406 (3)
P30613 (3)
P06744 (3)
P06733 (3)
P09104 (3)
P13929 (3)
P08237 (3)
O14556 (3)
P00558 (3)
P07205 (3)
P18669 (3)
P60174 (3)
P43490 (2)
P21439 (2)
O25420 (1)
Q48271 (1)
O25044 (1)
O25333 (1)
O25332 (1)
O25786 (1)
O25071 (1)

CHEBI ID

CHEBI:15377 (35)
CHEBI:16526 (33)
CHEBI:16335 (33)
CHEBI:18191 (32)
CHEBI:57945 (32)
CHEBI:57540 (32)
CHEBI:57642 (32)
CHEBI:43474 (32)
CHEBI:456216 (32)
CHEBI:15343 (32)
CHEBI:15698 (32)
CHEBI:17256 (32)
CHEBI:15361 (32)
CHEBI:17154 (32)
CHEBI:15033 (31)
CHEBI:57288 (31)
CHEBI:7125 (31)
CHEBI:29101 (31)
CHEBI:29033 (31)
CHEBI:456215 (31)
CHEBI:58289 (31)
CHEBI:30616 (31)
CHEBI:16828 (31)
CHEBI:15971 (31)
CHEBI:16240 (31)
CHEBI:17203 (31)
CHEBI:17115 (31)
CHEBI:16958 (31)
CHEBI:17172 (31)
CHEBI:17895 (31)

Metabolite Name

Carnitine (4)
Taurocholic acid (4)
4-Hydroxybenzaldehyde (4)
Cytidine (4)
Uridine (4)
Sialosyl-Tn saccharide (3)
Isoleucyl-Proline (3)
H-Val-Ala-OH (3)
Pentaethylene glycol (3)
Histidine (3)
N-Acetyl-arginine (3)
Hyocholic acid (3)
Gentamicin (3)
Nicotinamide N-oxide (3)
Valerylcarnitine (3)
Leu-Trp (3)
L-Lysine-L-valine (3)
Dimethylglycine (3)
4-Hydroxyproline (3)
Betaine (3)
Sphingosine (3)
Hydroxyphenyllactic acid (3)
Carnosine (3)
Biopterin (3)
Glycerophospho-N-Palmitoyl Ethanolamine (3)
Xanthurenic acid (3)
Ornithine (3)
5-Hydroxyindole (3)
Nicotinamide (3)
Taurine (3)

First Public Date

2026 (6)
2014 (5)
2025 (4)
2018 (2)
2023 (1)
2021 (1)
2020 (1)
2015 (1)

Modelling Approach

Constraint-based model (45)
Ordinary differential equation model (4)
Metabolic network (2)
Differential equation model (1)

Lab affiliation

1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
Assistant Professor, Department of Biotechnology, Indian Institute of Technology, Roorkee, (1)
CSIC-US, IBVF (1)
Coordinator and principal investigator at the Center for Medicinal Chemistry (CQMED). Also, principal investigator at the Center for Molecular Biology and Genetic Engineering. São Paulo, Brazil. (1)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Life Science and Technology, Graduate School of Life Science and Technology Institute of Science Tokyo (1)
Department of Modeling of Biological Processes COS, Heidelberg University, Germany (1)
Department of Molecular Medicine, University of Pavia (1)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (1)
National Cancer Institute, NIH Bethesda, MD 20892 (1)
Plant Stress Lab, Department of Molecular and Cell Biology, University of Cape Town (1)
Research Institute for Sport and Exercise Sciences, Liverpool John Moores University, United Kingdom (1)
Woods Hole Oceanographic Institution USA (1)

IsPrivate

False (63)

Model Flag

Non Kinetic (18)

Submitter Keywords

FROG (11)
Not Peer Reviewed (2)
Manuscript Accepted (1)
COVID-19 (1)

Classification

bacteria (5)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (9)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Translation profiling (1)
ChIP-chip by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2021 (47)
2025 (43)
2022 (42)
2023 (39)
2020 (32)
2016 (32)
2019 (29)
2014 (23)
2024 (23)
2017 (21)
2015 (20)
2012 (18)
2011 (18)
2018 (17)
2013 (14)
2008 (12)
2026 (11)
2009 (10)
2010 (8)
2007 (7)
2005 (5)
2002 (3)
2004 (2)
2006 (1)
2003 (1)
2000 (1)
1999 (1)

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OVCAR-3 Cells: Control vs. FBA-TPQ treated

The study was designed to determine the biological effects of novel marine alkaloid analog, FBA-TPQ on human ovarian cancer cells for its anti-tumor potential and the underlying mechanisms as a novel chemotherapeutic agent. Transcriptional profiling of human ovarian cancer cells comparing control ve...

ORGANISM(S): Homo sapiens

2011-11-12 | E-GEOD-25317 | biostudies-arrayexpress

OVCAR-3 Cells: Control vs. FBA-TPQ treated

ORGANISM(S): Homo sapiens

2011-11-12 | GSE25317 | GEO

Understanding FBA Solutions under Multiple Nutrient Limitations.

Not available

S-EPMC8143296 | biostudies-literature

Homo sapiens

OVCAR-3 Cells: Control vs. FBA-TPQ treated

PRJNA134955 | ENA

Genetic, Hormonal, and Transcriptomic Analyses Highlight the Crucial Role of Phytohormones in First Branch Angle (FBA) Regulation in Pepper

PRJNA1225623 | ENA

FBA: feature barcoding analysis for single cell RNA-Seq.

Not available

S-EPMC9502162 | biostudies-literature

Genetic, Hormonal, and Transcriptomic Analyses Highlight the Crucial Role of Phytohormones in First Branch Angle (FBA) Regulation in Pepper

Background The first branch angle (FBA) is a critical trait influencing plant architecture, yield, and mechanized harvesting efficiency in pepper (Capsicum annuum L.). However, the genes and regulatory processes involved remain largely unclear. Results The phenotypic evaluation of 220 pepper accessi...

ORGANISM(S): Capsicum annuum

2025-09-18 | GSE289948 | GEO

OM-FBA: Integrate Transcriptomics Data with Flux Balance Analysis to Decipher the Cell Metabolism.

Not available

S-EPMC4839607 | biostudies-literature

Population FBA predicts metabolic phenotypes in yeast.

Not available

S-EPMC5626512 | biostudies-literature

The FBA solution space kernel: introduction and illustrative examples.

Not available

S-EPMC12273201 | biostudies-literature

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