fluorescence image analysis

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Transcriptomics (3701)
Unknown (1076)
Proteomics (87)
Genomics (81)
Metabolomics (11)
Models (1)
Clinical (1)

Organisms

Homo sapiens (1275)
Mus musculus (953)
Danio rerio (133)
Drosophila melanogaster (106)
Arabidopsis thaliana (96)
Rattus norvegicus (74)
Saccharomyces cerevisiae (55)
Caenorhabditis elegans (50)
Oncorhynchus mykiss (48)
Salmo salar (36)
Gallus gallus (28)
Escherichia coli (26)
Pimephales promelas (25)
Sus scrofa (25)
Bos taurus (23)
Zea mays (21)
Streptomyces coelicolor (19)
Candida albicans (17)
Rhizobium leguminosarum (16)
Campylobacter jejuni (14)
Bacillus subtilis (13)
Ciona intestinalis (12)
Streptococcus pyogenes (12)
synthetic construct (12)
Solea senegalensis (11)
Macaca mulatta (10)
Fundulus heteroclitus (10)
Aspergillus fumigatus (10)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (9)
Sparus aurata (9)

Organisms

Homo sapiens (12)
Mus musculus (12)
Rattus norvegicus (4)
Ruditapes decussatus (1)
Pseudomonas savastanoi pv. phaseolicola (1)
Mycobacterium tuberculosis (1)
Equus caballus (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (3811)
ENA (39)
MetaboLights (11)
pride (10)
geo (8)
LINCS (3)
NODE (3)
Cell Collective (1)
EGA (1)
iProX (1)
jPOST (1)
MassIVE (1)

Tissue

Skin (2)
Cell culture (2)
Esophageal cancer (1)
Duodenum (1)
Duodenal cancer (1)
Colonocyte (1)
Tonsil (1)
Spermatozoon (1)
Keratinocyte (1)
Bone marrow (1)
Lung (1)
Epithelial cell (1)
Liver (1)

Disease

Normal (7)
Breast adenocarcinoma (2)
With bone lytic lesion (1)
GIP-dependent Cushing's syndrome (1)
Osteosarcoma subtype fibroblastic (1)
Non Hodgkin's lymphoma (1)
HIV and HCV coinfected (1)
Autoimmune disorder (1)
Not applicable (1)
Unclassified carcinoid (1)
Chronic gastritis (1)
No lesions (1)
Wolbachia infected (1)
Challenged with Pieris rapae larvae (1)
Untreated prostate cancer (1)
Follicular thyroid adenoma (1)
Infected (1)
Bladder cancer (1)
Rheumatoid arthritis (1)
Type 1 Diabetes Mellitus (1)
ARR1-SRDX (1)
IBDV infected (1)
Leukemia (1)
Pancreatic adenocarcinoma (1)
Cystic fibrosis (1)
Locally advanced rectal cancer (1)
Papillary thyroid carcinoma (1)
Burkitt lymphoma (1)
Megakaryoblastic leukemia (1)
Murine hereditary hemochromatosis (1)

Technology Type

Mass Spectrometry (10)
Mass spectrometry (9)
Gel-based experiment (4)
Fluorescence intensity (3)
Fluorescence imaging (3)
Bottom-up proteomics (3)
Mass spectrometry assay (2)
Shotgun proteomics (2)
ILLUMINA, Illumina MiSeq (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
NextSeq 500 (10)
Scanning hardware (8)
Axon GenePix 4000B scanning hardware (8)
Agilent Technologies G2565CA microarray scanner (6)
Illumina MiSeq (5)
ScanArray 4000 [PerkinElmer] (4)
GenePix 4000B [Axon Instruments] (4)
NextSeq 2000 (4)
Illumina HiSeq 2000 (4)
GenePix 4000A [Axon Instruments] (3)
G2505A DNA microarray scanner [Agilent] (3)
418 [Affymetrix] (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
Axon GenePix 4000A scanning hardware (2)
Agilent DNA Microarray Scanner (2)
ScanArray scanning hardware (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
428 [Affymetrix] (2)
GenePix Personal 4100A [Axon Instruments] (2)
G2565BA DNA microarray scanner [Agilent] (2)
ScanArray Express HT [PerkinElmer] (2)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Cell culture (1)
Lab Bench (1)
10x genomic Chromium controller (1)
Mac (1)
MA900, Sony (1)

Publication Date

2010 (993)
2012 (788)
2011 (713)
2013 (390)
2014 (180)
2008 (177)
2009 (161)
2015 (122)
2007 (72)
2016 (68)
2006 (33)
2017 (23)
2024 (18)
2005 (17)
2018 (16)
2026 (12)
2025 (12)
2022 (12)
2021 (11)
2023 (8)
2004 (7)
2020 (6)
2019 (6)
2003 (1)

CHEBI ID

CHEBI:72998 (3)
CHEBI:134424 (2)
CHEBI:87087 (2)
CHEBI:143713 (2)
CHEBI:84752 (2)
CHEBI:72749 (2)
CHEBI:64433 (2)
CHEBI:72999 (2)
CHEBI:17351 (2)
CHEBI:15843 (2)
CHEBI:28610 (2)
CHEBI:143718 (1)
CHEBI:143711 (1)
CHEBI:143716 (1)
CHEBI:77696 (1)
CHEBI:9518 (1)
CHEBI:143709 (1)
CHEBI:170068 (1)
CHEBI:170066 (1)
CHEBI:138904 (1)
CHEBI:136198 (1)
CHEBI:145847 (1)
CHEBI: 136169 (1)
CHEBI:138521 (1)
CHEBI:89602 (1)
CHEBI:88906 (1)
CHEBI:89539 (1)
CHEBI:89536 (1)
CHEBI:171654 (1)
CHEBI:171653 (1)

Metabolite Name

PE(18:1/0:0) (2)
35-aminobacteriohopane-31,32,33,34-tetrol (2)
TAG 53:6 (C15:0/C16:0/C22:6) (1)
TAG 59:12 (15:0/22:6/22:6) (1)
TAG 55:7 (15:0/18:1/22:6) (1)
TAG 55:6 (15:0/18:0/22:6) (1)
TAG 55:1 (15:0/18:1/22:0) (1)
TAG 51:5 (15:0/18:1/18:4) (1)
TAG 51:4 (15:0/18:1/18:3) (1)
TAG 51:3 (15:0/18:1/18:2) (1)
TAG 51:2 (15:0/18:1/18:1) (1)
TAG 49:1 (15:0/16:0/18:1) (1)
TAG 48:1 (14:0/16:0/18:1) (1)
TAG 48:1 (15:0/15:0/18:1) (1)
TAG 47:1 (14:0/15:0/18:1) (1)
Bacteriohopane-32,33,34,35-tetrol (1)
440.0420@4.43min (1)
Sinapoylglucose (1)
471.083@4.43 (1)
Hydroxycamalexin hexoside2 (1)
Hydroxycamalexin hexoside1 (1)
363.069@5.95 (1)
205.08@5.21 (1)
191.143@8.09 (1)
161.096@8.03 (1)
PC(18:1(5Z)/18:1(5Z)) (1)
Lombricine (1)
2-hexadecyl-sn-glycero-3-phosphocholine (1)
Scopolin (1)
PC (36:2) (1)

First Public Date

2014 (23)
2025 (7)
2019 (3)
2026 (2)
2023 (2)
2021 (1)
2015 (1)

Classification

bacteria (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (3024)
Comparative genomic hybridization by array (201)
Unknown experiment type (122)
Proteomic profiling by array (73)
ChIP-chip by tiling array (70)
RNA-seq of coding RNA (61)
Other (52)
Methylation profiling by array (42)
Transcription profiling by tiling array (40)
ChIP-seq (30)
ChIP-chip by array (19)
RNA-seq of coding RNA from single cells (15)
Genotyping by array (13)
MicroRNA profiling by array (12)
RNA-seq of non coding RNA (12)
Methylation profiling by high throughput sequencing (5)
Spatial transcriptomics by high-throughput sequencing (2)
DNA-seq (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Tiling path by array (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
Antigen profiling (1)
ATAC-seq (1)
Hi-C (1)
Observational (1)

Release Date

2010 (1011)
2012 (811)
2011 (730)
2013 (408)
2014 (222)
2008 (183)
2009 (171)
2015 (161)
2022 (128)
2016 (120)
2023 (113)
2025 (111)
2021 (105)
2024 (104)
2017 (88)
2018 (84)
2020 (82)
2019 (79)
2007 (75)
2006 (36)
2026 (30)
2005 (19)
2004 (8)
2002 (2)
2000 (1)
2001 (1)
1998 (1)

Lab affiliation

Laboratory of Animal Histology, Faculty of Biology, “Alexandru Ioan Cuza” University of Iasi, Carol I Bvd. No. 22, Iasi 700505, Romania (1)
Department of Oncology, LongHua Hospital, Shanghai University of Traditional Chinese Medicine, No. 725 Wanping South Road, Xuhui District, Shanghai, 200032, China. (1)
Indian Institute of Science Education and Research, Pune (1)
J. Forja Dpt. Physical Chemistry CACYTMAR Campus de Excelencia Internacional del Mar University of Cadiz (Spain) (1)
Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Professor of Microbiology Hospital Clinic Head of the Department of Clinical Microbiology School of Medicine, University of Barcelona Barcelona, Spain (1)
Research Associate Professor, Biosciences Arizona State University(ASU) Neurodegenerative Disease Associate Faculty Neurodegenerative Disease Research Center Associate Faculty Team ASU-Banner Neurodegenerative Disease Research Center (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (1)
Nanjing University (1)
Nutrigenomics and Fish Growth Endocrinology Group, Institute of Aquaculture Torre de la Sal (IATS-CSIC), 12595 Ribera de Cabanes, Castellón, Spain (1)

Location

Denmark (1)

Keyword

Primary anastomosis (1)
Indocyanine green (1)
Anastomotic perfusion (1)

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FLIMJ: An open-source ImageJ toolkit for fluorescence lifetime image data analysis.

Not available

S-EPMC7773231 | biostudies-literature

Phasor-based image segmentation: machine learning clustering techniques.

Not available

S-EPMC8221971 | biostudies-literature

Intelligent fluorescence image analysis of giant unilamellar vesicles using convolutional neural network.

Not available

S-EPMC8783447 | biostudies-literature

Highly Multiplexed Fluorescence in Situ Hybridization for in Situ Genomics.

Not available

S-EPMC6504678 | biostudies-literature

FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy.

Not available

S-EPMC6986076 | biostudies-literature

Prospective Identification, Isolation, and Profiling of a Telomerase-Expressing Subpopulation of Human Neural Stem Cells, using sox2 Enhancer-Directed Fluorescence-Activated Cell Sorting

Sox2 is expressed by neural stem and progenitor cells, and a sox2 enhancer identifies these cells in the forebrains of both fetal and adult transgenic mouse reporters. We found that an adenovirus encoding EGFP placed under the regulatory control of a 0.4 kb sox2 core enhancer selectively identified ...

ORGANISM(S): Homo sapiens

2011-02-25 | E-GEOD-27505 | biostudies-arrayexpress

Precision Automation of Cell Type Classification and Sub-Cellular Fluorescence Quantification from Laser Scanning Confocal Images.

Not available

S-EPMC4746258 | biostudies-literature

Protocol for automated multivariate quantitative-image-based cytometry analysis by fluorescence microscopy of asynchronous adherent cells.

Not available

S-EPMC10365954 | biostudies-literature

Automated image analysis for quantitative fluorescence in situ hybridization with environmental samples.

Not available

S-EPMC1892889 | biostudies-literature

Fourier ring correlation simplifies image restoration in fluorescence microscopy.