freshwater habitats

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Genomics (254)
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Methylation profiling (1)

Organisms

Procambarus virginalis (4)
Daphnia magna (2)
Procambarus fallax (2)
Aedes aegypti (2)
Polynucleobacter asymbioticus (2)
Cloeon dipterum (1)
Oncorhynchus nerka (1)
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Cyclotella cryptica (1)
Daphnia pulex (1)
Escherichia coli BL21 (1)
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Rhodococcus jostii RHA1 (1)
Sphingomonas sp. NM05 (1)
Synechocystis sp. PCC 6803 (1)
freshwater sediment metagenome (1)
soil metagenome (1)
synthetic construct (1)
Aeromonas hydrophila subsp. hydrophila AL09-71 (1)
cellular organisms (1)
Pseudanabaena (1)

Organisms

Gasterosteus aculeatus (5)
freshwater sediment metagenome (4)
Hypanus sabinus (3)
Hyla sarda (3)
Ophthalmolebias constanciae (3)
Crocodylus niloticus (3)
Pantodon buchholzi (3)
freshwater metagenome (3)
Procambarus virginalis (2)
lake water metagenome (2)
Radix auricularia (1)
Actinernus sp. WN-2022 (1)
Etheostoma perlongum (1)
Sensonator valentiensis (1)
Lottia gigantea (1)
Polynucleobacter necessarius (1)
Blastopirellula marina (1)
Nitrobacter hamburgensis (1)
Paradactylodon persicus (1)
anchialine metagenome (1)
Devario regina (1)
Polynucleobacter asymbioticus (1)
Cytophaga hutchinsonii (1)
Nitrospira moscoviensis (1)
Philodina roseola (1)
Ruminiclostridium papyrosolvens (1)
Roseofilum sp. KMC-1 (1)
Nostoc punctiforme PCC 73102 (1)
Cyclotella cryptica (1)
Clarias batrachus (1)

Repository

ENA (248)
geo (13)
biostudies-arrayexpress (9)
pride (8)
MassIVE (6)
MetaboLights (6)
NODE (4)
iProX (1)
jPOST (1)

Tissue

Whole body (3)
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Gill (1)
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Muscle (1)
Ovary (1)

Technology Type

Mass Spectrometry (8)
Shotgun proteomics (6)
Mass spectrometry (4)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
Bottom-up proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (2)
Q Exactive (2)
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Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Orbitrap Fusion (1)
X500R QTOF (1)
Gas Chromatography MS - positive (1)
LTQ FT-Ultra (Thermo Scientific) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2022 (7)
2018 (6)
2026 (5)
2025 (4)
2011 (3)
2017 (3)
2024 (3)
2023 (2)
2021 (2)
2015 (2)
2019 (2)
2020 (2)
2016 (1)
2012 (1)
2010 (1)

CHEBI ID

CHEBI:16335 (3)
CHEBI:17992 (3)
CHEBI:26078 (3)
CHEBI:15344 (2)
CHEBI:15354 (2)
CHEBI:15824 (2)
CHEBI:15940 (2)
CHEBI:16040 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16828 (2)
CHEBI:16865 (2)
CHEBI:17151 (2)
CHEBI:17268 (2)
CHEBI:17596 (2)
CHEBI:17750 (2)
CHEBI:17754 (2)
CHEBI:18183 (2)
CHEBI:18300 (2)
CHEBI:29019 (2)
CHEBI:29069 (2)
CHEBI:30746 (2)
CHEBI:30769 (2)
CHEBI:30797 (2)
CHEBI:33508 (2)
CHEBI:4167 (2)
CHEBI:7916 (2)
CHEBI:10070 (1)
CHEBI:10120 (1)
CHEBI:10136 (1)

Metabolite Name

Adenosine (3)
12-Hydroxydodecanoic acid (2)
12-Oxo-2,3-dinor-10,15-phytodienoic acid (2)
5,6-DHET (2)
Acetoacetate (2)
Adenine (2)
Benzoic acid (2)
Caprylic acid (2)
Cohumulone (2)
D-Fructose (2)
Dibutyl phthalate (2)
Gibberellin A53 (2)
Glyceric acid (2)
Glycerol (2)
Guanosine (2)
Hypoxanthine (2)
Inosine (2)
Isokobusone (2)
L-Carnitine (2)
L-Glutamine (2)
L-Histidine (2)
L-Phenylalanine (2)
L-Proline (2)
Maleic acid (2)
Methyl jasmonate (2)
Palmitic acid (2)
Prostaglandin B2 (2)
Pyroglutamic acid (2)
Ricinoleic acid (2)
Sucrose (2)

First Public Date

2026 (39)
2025 (28)
2018 (26)
2024 (23)
2023 (23)
2022 (20)
2021 (17)
2020 (17)
2019 (13)
2013 (12)
2016 (9)
2015 (8)
2017 (6)
2014 (5)
2012 (1)
2011 (1)

Classification

helminths (1)
bacteria (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (4)
Animal - High-throughput sequencing (1)

Release Date

2021 (123)
2025 (123)
2023 (118)
2022 (118)
2020 (101)
2024 (99)
2018 (98)
2019 (90)
2016 (72)
2015 (57)
2017 (56)
2011 (36)
2013 (28)
2012 (26)
2014 (26)
2026 (19)
2010 (15)
2008 (8)
2009 (7)
2005 (7)
2003 (7)
2007 (5)
2001 (3)
2006 (2)
2004 (1)
1998 (1)

Lab affiliation

Center for Evolutionary and Theoretical Immunology (CETI), Department of Biology, University of New Mexico, Albuquerque, NM, USA (1)
Center for Evolutionary and Theoretical Immunology (CETI), Department of Biology, University of New Mexico, Albuquerque, NM, USA. (1)
Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de, Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in (1)
Laboratory of Neurogenetics and Behavior The Rockefeller University 1230 York Avenue Box 63 New York, NY 10065 (1)
Metazoa Phylogenomics & Genome Evolution Lab, Institute of Evolutionary Biology (CSIC-UPF). Passeig Marítim de la Barceloneta 37-49; 08003 Barcelona; Spain (1)
University of Basel, Department of Environmental Science, Spring Ecology Research Group, Klingelbergstrasse 27, 4056, Basel, Switzerland (1)
University of Basel, Department of Environmental Sciences, Geoecology Research Group, Klingelbergstrasse 27, 4056 Basel, Switzerland (1)
cE3c –Centre for Ecology, Evolution and Environmental Changes & CHANGE - Global Change and Sustainability Institute. Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal (1)

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Systems toxicology of a tire-wear pollutant: Multi-omics evidence for bioenergetic reprogramming in freshwater clams

The increasing release of tire-derived transformation products into aquatic ecosystems has raised significant environmental concerns, particularly regarding 6PPD-quinone (6PPDQ), a highly toxic compound formed from a widely used tire antioxidant. Despite growing attention, its chronic effects and...

2026-03-26 | MTBLS14142 | MetaboLights

freshwater metagenome

Freshwater habitats river Metagenome

PRJNA254927 | ENA

The conservation value of freshwater habitats for frog communities of lowland fynbos.

Not available

S-EPMC10249618 | biostudies-literature

New Dothideomycetes from Freshwater Habitats in Spain.

Not available

S-EPMC8705806 | biostudies-literature

freshwater metagenome

Australian freshwater habitats Transcriptome or Gene expression