fusion proteins

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Unknown (10443)
Proteomics (6997)
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Transcriptomics (1467)
Other (50)
Metabolomics (34)
Methylation profiling (13)
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Clinical (1)

Organisms

Drosophila melanogaster (1348)
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Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Cricetulus griseus (4)
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Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (1)
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Ostreococcus tauri (1)
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Organisms

Homo sapiens (324)
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Carcinoma (1)

Technology Type

Mass Spectrometry (5654)
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Affinity purification coupled with mass spectrometry proteomics (877)
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Gel-based experiment (321)
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HDMSE (12)
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MSE (6)
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ILLUMINA, Illumina HiSeq 2000 (2)
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Illumina HiSeq 2000 (2)
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HiSeq X Ten, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
NextSeq 500, Illumina HiSeq 2000, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Affymetrix SNP 6.0, Illumina HT 12, Aperio image - H&E stained tissue_section (1)

Instrument Platform

Illumina HiSeq 2500 (26)
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None (2)
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NEBNext Ultra II Directional RNA Library Prep Kit (1)
RNeasy Plant Mini Kit (Qiagen, Hilden, Germany) (1)
Element AVITI (1)
HPC services from the University of Granada (http://alhambra.ugr.es) (1)
Tapestation (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
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BIONEER gDNA extraction kit (1)
Of TruSeq DNA Nano Sample Preparation Kit(Illumina) (1)

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2019 (495)
2018 (327)
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2011 (193)
2012 (178)
2015 (175)
2014 (162)
2010 (130)
2008 (102)
2009 (81)
2007 (50)
2005 (22)
2006 (12)
2004 (5)
2003 (2)

UNIPROT ID/AC

3HAO_YEAST (3)
6PGD1_YEAST (3)
AAP1_YEAST (3)
AATC_YEAST (3)
AB140_YEAST (3)
ABF2_YEAST (3)
ABP1_YEAST (3)
ACAC_YEAST (3)
ACBP_YEAST (3)
ACH1_YEAST (3)
ACON2_YEAST (3)
ACON_YEAST (3)
P63231 (1)
P06820 (1)
P03437 (1)
P03508 (1)
P15659 (1)
P03427 (1)
P16511 (1)
P05777 (1)
P03466 (1)
Q9NTU9 (1)
Q3T1B0 (1)
Q9NWT6 (1)
P16157 (1)
Q9Y2N7 (1)
Q99814 (1)
P92973 (1)
Q9LKL2 (1)
Q16665 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:16856 (7)
CHEBI:17768 (6)
CHEBI:16708 (6)
CHEBI:16610 (6)
CHEBI:15741 (6)
CHEBI:16335 (6)
CHEBI:17509 (6)
CHEBI:44897 (6)
CHEBI:30915 (6)
CHEBI:27897 (6)
CHEBI:17895 (6)
CHEBI:30769 (6)
CHEBI:16680 (5)
CHEBI:17202 (5)
CHEBI:17239 (5)
CHEBI:16695 (5)
CHEBI:16750 (5)
CHEBI:16977 (5)
CHEBI:25017 (5)
CHEBI:17148 (5)
CHEBI:17115 (5)
CHEBI:17568 (5)
CHEBI:16467 (5)
CHEBI:18019 (5)
CHEBI:17203 (5)
CHEBI:26667 (1)
CHEBI:25078 (1)
CHEBI:26034 (1)
CHEBI:15379 (1)
CHEBI:33699 (1)

Metabolite Name

Adenosine (6)
L-Tryptophan (6)
Adenine (6)
Taurine (5)
Spermidine (5)
Proline (5)
Xanthine (5)
L-Tyrosine (5)
Hypoxanthine (5)
Leucine (4)
AMP (4)
L-Lysine (4)
Succinic acid (4)
Cysteinylglycine (4)
L-Histidine (4)
Linoleic acid (4)
L-Glutamine (4)
Glutamine (4)
Uridine (4)
L-Leucine (4)
Inosine (4)
Malate (3)
Hypotaurine (3)
L-Alanine (3)
Uracil (3)
L-Aspartic acid (3)
Citrulline (3)
CDP (3)
Glutathione (3)
L-Proline (3)

First Public Date

2025 (117)
2024 (100)
2014 (93)
2021 (78)
2026 (74)
2023 (67)
2020 (52)
2022 (51)
2017 (43)
2019 (32)
2018 (32)
2013 (27)
2015 (24)
2016 (23)
2012 (1)

Modelling Approach

Ordinary differential equation model (5)

Study status

Recruiting (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (78)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (27)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (16)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland (16)
University of Edinburgh (16)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (14)
Mendel University in Brno (14)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (14)
The Institute of Cancer Research (14)
Head of the Curie Institute Mass Spectrometry Platform (13)
USDA-ARS (12)
Harvard Medical School (11)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (10)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (10)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (10)
The Institute of Cancer Research, London (10)
Wellcome Trust Sanger Institute (10)
Brigham and Women's Hospital, Harvard Medical School (9)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (9)
Department of Biological Sciences, University of Alberta (9)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (9)
School of Life Sciences, University of Warwick (9)
University of Warwick (9)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA (8)
The Rockefeller University (8)
UCSF (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
IRCCS Istituto G Gaslini (7)
Northwest University (7)

Keyword

CRAF/RAF1 fusion (1)
CRAF/RAF1 amplification (1)

IsPrivate

False (5)

Classification

bacteria (13)
protozoa (6)
fungi (4)
viruses (4)
helminths (2)

Modification

N6 (10)
Not available (8)
4x(15)N labeled L-arginine (7)
N6-dimethyl-L-lysine (7)
2x(15)N labeled L-lysine (6)
4-tetrahydrothiazine-3-carboxylic acid (5)
4x(2)H labeled dimethylated residue (4)
15.994915 (2)
4x(2)H labeled dimethylated L-lysine (2)
57.021464 (2)
-17.026549 (1)
-18.010565 (1)
1x(15)N labeled L-valine (1)
4-dinitrophenyl modified residue (1)
42.010565 (1)
58.005479 (1)
6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (752)
ChIP-seq (335)
RNA-seq of coding RNA (166)
ChIP-chip by tiling array (41)
Proteomic profiling by array (25)
Unknown experiment type (23)
Other (20)
Comparative genomic hybridization by array (19)
Methylation profiling by high throughput sequencing (18)
ChIP-chip by array (12)
RNA-seq of non coding RNA (12)
DNA-seq (11)
RNA-seq of coding RNA from single cells (11)
Transcription profiling by tiling array (8)
Transcription profiling by RT-PCR (8)
RNA-seq of total RNA (7)
Animal - High-throughput sequencing (6)
RNAi profiling by array (5)
Methylation profiling by array (5)
CLIP-seq (4)
High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
RIP-chip by array (2)
CLIP-Seq (2)
RIP-seq (2)
CUT&RUN (2)
Transcription profiling by high throughput sequencing (1)

Release Date

2022 (837)
2021 (808)
2023 (718)
2013 (676)
2025 (673)
2020 (664)
2024 (637)
2014 (622)
2016 (616)
2019 (610)
2015 (581)
2017 (565)
2018 (558)
2012 (519)
2011 (501)
2010 (429)
2008 (338)
2009 (324)
2007 (216)
2006 (179)
2005 (139)
2004 (119)
2026 (107)
2002 (94)
2001 (89)
2003 (88)
2000 (81)
1999 (76)
1998 (67)
1997 (23)

Location

South Korea (1)
Spain (1)
Belgium (1)
Canada (1)
United States (1)
Australia (1)
France (1)

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Attenuate host susceptibility to respiratory virus invasion by inhibiting interactions between host proteins SLC16A3 and AP1G1

Modulating cell endocytosis activity to reduce host susceptibility to virus represents a promising strategy for antiviral drug development. In this study, we reveal that lactate transporter SLC16A3 as a critical host factor for reducing diverse virus invasion. By performing metabolomics, proteomi...

2025-07-28 | MTBLS12788 | MetaboLights

Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion

Fusion of donor mesenchymal stem cells with parenchymal cells of the recipient can occur in the brain, liver, intestine and heart following transplantation. The therapeutic benefit or detriment of resultant hybrids is unknown. Here we sought a global view of phenotypic diversification of mesenchym...

ORGANISM(S): Mus musculus

2016-03-22 | E-GEOD-69926 | biostudies-arrayexpress

Detection of immunogenic proteins from bacteria

Detection of immunogenic proteins remains an important task for life sciences as it nourishes the understanding of pathogenicity, illuminates new potential vaccine candidates and broadens the spectrum of biomarkers applicable in diagnostic tools. Traditionally, immunoscreenings of expression librari...

ORGANISM(S): Campylobacter jejuni

2011-10-26 | E-GEOD-33295 | biostudies-arrayexpress

MLL Fusion Proteins Preferentially Regulate a Small Set of Wild Type MLL Target Genes in the Leukemic Genome

MLL encodes a histone methyltransferase that is critical in maintaining gene expression during embryonic development and hematopoiesis. 11q23 translocations encode chimeric MLL fusions that act as potent drivers of acute leukemia. However, it remains unclear what portion of the leukemic genome is un...

ORGANISM(S): Mus musculus

2011-04-28 | E-GEOD-24794 | biostudies-arrayexpress

iCLIP of GFP fusion proteins

PRJEB12353 | ENA

Nuclear Condensation of NUP98-Fusion Proteins drives leukemogenic gene expression

PRJNA667460 | ENA

Phase separation of YAP fusion proteins drives supratentorial ependymoma I

PRJNA753777 | ENA

Phase separation of YAP fusion proteins drives supratentorial ependymoma (methyl-seq)

PRJNA852700 | ENA

Protein Interactions of 7 MLL-fusion Proteins

MLL-fusions represent a large group of leukemia drivers, whose diversity originates from the vast molecular heterogeneity of C-terminal fusion partners of MLL protein. While studies of selected MLL-fusions have revealed critical molecular pathways, unifying mechanisms across all MLL-fusions remain p...

ORGANISM(S): Homo sapiens (Human)

2018-05-25 | PXD009338 | Pride

Screening for novel immunogenic proteins of Campylobacter jejuni NCTC 11168

The screening of a cDNA derived expression library of Campylobacter jejuni NCTC 11168 expressed in E. coli using a fusion construct and specific HaloTag interaction to a modified surface is shown. 1536 different clones were screened including positive (hisJ, cjaA, peb1a) and negative (argC, pyrC, ga...

ORGANISM(S): Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

2013-04-06 | E-GEOD-45268 | biostudies-arrayexpress

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22375 Results

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