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Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). (2)
V. L. Talrose Institute for Energy Problems of Chemical Physics, N. N. Semenov Federal Research Center of Chemical Physics, Russian Academy of Sciences, 119334 Moscow, Russia (2)
1)VIB Center for Medical Biotechnology, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 2)Department of Biomolecular Medicine, Ghent University, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium 3)VIB Proteomics Core, Technologiepark-Zwijnaarde 75, B9052 Ghent, Belgium (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany, 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom; ( lab head ) (1)
1. Institut de Pharmacologie et de Biologie Structurale (IPBS), CNRS, Université de Toulouse (UT), Toulouse, 31077, France 2. Infrastructure Nationale de Protéomique, ProFI, UAR 2048, Toulouse, France (1)
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Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (1)
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Institute of Plant Biology and Biotechnology, University of Muenster, Germany (1)
Juliane Liepe, Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). Email: jliepe@mpinat.mpg.de Michele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk (1)
Laboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, CNRS, Université de Strasbourg (1)
Mass Spectrometry Facility, Max Perutz Labs Vienna, University of Vienna, Vienna Biocenter, Dr.-Bohr-Gasse 7, 1030 Vienna (1)
Max Planck Institute of Biochemistry (1)
Michele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk, Juliane Liepe, Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). Email: jliepe@mpinat.mpg.de (1)
Molecular Systems Biology unit, EMBL, Heidelberg, Germany (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (1)
Ruhr-University Bochum, Medical Faculty, Medizinisches Proteom-Center, Medical Bioinformatics. Ruhr-University Bochum, Medical Proteome Analysis, Center for Proteindiagnostics (PRODI). (1)
Spectroswiss, Switzerland (1)
Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford (1)
The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Australia, Department of Medical Biology, University of Melbourne, Melbourne, Victoria 3010, Australia (1)
University of Groningen, Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands Lund University, Department of Biomedical Engineering, Lund, Sweden (1)

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iBench Ground Truth Validation Tool

iBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. For this project, iBench was applied to Percolator rescored results from Mascot searches from a tryptic digestion of the K562 proteome, HLA-I immunopeptidome experiment, and synthetic peptide...

ORGANISM(S): Homo sapiens (Human)

2022-10-11 | PXD034968 | Pride

Single-Molecule m6A nanopore profiling using ground-truth RNAs reveals compartmentalized gene expression regulation

Ground-truth RNAs for single-molecule nanopore sequencing prediction

PRJEB98639 | ENA

iBench Ground Truth Validation Tool 2.0

iBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. In this updated version, iBench 2.0 takes high confidence peptide identifications from previously measured MS data and embeds the sequences in an in silico-only proteome as spliced or non-spl...

ORGANISM(S): Homo sapiens (Human)

2023-12-21 | PXD044451 | Pride

Mass spectrometry 20s proteasomes Benchmarking Mhc-i presentation Pcps

SEG: Segmentation Evaluation in absence of Ground truth labels.

Not available

S-EPMC9980141 | biostudies-literature

Community annotation experiment for ground truth generation for the i2b2 medication challenge.

Not available

S-EPMC2995684 | biostudies-literature

Statistical framework for validation without ground truth of choroidal thickness changes detection.

Not available

S-EPMC6599222 | biostudies-literature