Sort   by:  
 Page size 
MetabolomicsBenchmarking non-targeted metabolomics using yeast extract controls

Non-target analysis based on high resolution mass spectrometry calls for quality controls to validate analytical workflows. So far no community-wide used quality control material has been established in metabolomics. In this work, we propose ethanolic yeast extracts derived from Pichia pastoris i...

2020-09-29 | MTBLS1782 | MetaboLights
MetabolomicsLipid Data Analyzer: The LDA algorithm against the in silico library LipidBlast (LipidBlast benchmarking experiment)
Lipid Data Analyzer (LDA; http://genome.tugraz.at/lda2) provides automated and reliable annotation of lipid species and their molecular structures in high-throughput data from chromatography-coupled tandem mass spectrometry using embedded rule sets. Using various low- and high-resolution mass spectr...
2017-11-07 | MTBLS397 | MetaboLights
ProteomicsBenchmarking and Best Practices for Quantitative Proteomics
We use an integrated benchmarking approach to empirically establish guidelines for data acquisition, statistical approach, and replicate numbers for accurate quantification. We evaluated three workflows for protein- and peptide-level quantitative accuracy: data dependent acquisition (DDA), data inde...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2020-04-06 | MSV000085239 | MassIVE
TranscriptomicsSingle-nucleus RNA-seq (10x Genomics Flex) of wild-type C57BL/6J mouse spleen following Plasmodium berghei ANKA infection, generated as a transcriptome-wide reference for the SpatialBench spatial transcriptomics benchmark
This dataset provides single-nucleus RNA-sequencing (snRNA-seq) profiles of wild-type mouse spleen, generated as a matched, transcriptome-wide reference for the SpatialBench resource benchmarking high-resolution spatial transcriptomics platforms (Visium HD, Xenium and MERSCOPE). Spleens were collect...
ORGANISM(S): Mus musculus 
2026-07-07 | E-MTAB-17245 | biostudies-arrayexpress
UnknownFindings from the Fifth Emergency Department Benchmarking Alliance Summit.
Not available
S-EPMC12159897 | biostudies-literature
TranscriptomicsiiCLIP protocol benchmarking with PTBP1
We describe an improved individual nucleotide resolution CLIP protocol (iiCLIP), which can be completed within 4 days from UV crosslinking to libraries for sequencing. For benchmarking, we directly compared PTBP1 iiCLIP libraries with the iCLIP2 protocol produced under standardised conditions with 1...
ORGANISM(S): Homo sapiens 
2022-08-01 | E-MTAB-10881 | biostudies-arrayexpress
TranscriptomicsBenchmarking brain organoid recapitulation of fetal corticogenesis
Brain organoids (BO) enabled the investigation of human corticogenesis in-vitro with an increasing range of protocols achieving its remarkable recapitulation. However, we lack a resource gathering fetal cortex-specific gene co-expression patterns and their behavior in BO. We complement the current k...
ORGANISM(S): Homo sapiens 
2022-12-31 | E-MTAB-11239 | biostudies-arrayexpress
GenomicsONT benchmarking paper
ONT benchmarking paper
PRJEB93892 | ENA
GenomicsBenchmarking CRISPR Whole genome Drop out Screen B S
This study is a benchmarking exercise to explore potential source of variation between different CRISPR drop out libraries.
EGAS00001002931 | EGA
GenomicsBenchmarking Sequence Technologies for Virome Sequencing
Benchmarking Sequence Technologies for Virome Sequencing
PRJEB56639 | ENA
Sort   by:  
 Page size