herbal medicine

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Organisms

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Organisms

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mouse gut metagenome (4)
herbal medicine metagenome (3)
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Caenorhabditis elegans (3)
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endophyte metagenome (2)
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CHEBI ID

CHEBI:17992 (5)
CHEBI:28044 (4)
CHEBI:30769 (4)
CHEBI:15366 (3)
CHEBI:22653 (3)
CHEBI:24898 (3)
CHEBI:26986 (3)
CHEBI:27266 (3)
CHEBI:26271 (3)
CHEBI:15756 (3)
CHEBI:15428 (3)
CHEBI:16865 (3)
CHEBI:16449 (3)
CHEBI:16335 (3)
CHEBI:167418 (2)
CHEBI:49000 (2)
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CHEBI:30751 (2)
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CHEBI:28842 (2)
CHEBI:17568 (2)

Metabolite Name

Sucrose (5)
Inosine (4)
Cellobiose (3)
Taurine (3)
L-Glutamine (3)
Palmitic acid (3)
Galactonic Acid (2)
Elemicin (2)
4-Pyridoxic Acid (2)
3-Methyl-2-Oxovaleric Acid (2)
2-Phenylethanol (2)
Acetoin (2)
Uric Acid (2)
Lactitol (2)
1-Kestose (2)
Arachidonic Acid (2)
Normetanephrine (2)
Glutamyltyrosine (2)
O-Acetylserine (2)
Phytol (2)
5'-Methylthioadenosine (2)
L-Fucitol (2)
Ornithine (2)
Serotonin (2)
Pyruvic Acid (2)
Oxalic Acid (2)
Pyroglutamic acid (2)
L-Leucine (2)
1-Methyladenosine (2)
Lithocholic Acid (2)

First Public Date

2025 (84)
2026 (67)
2024 (65)
2023 (48)
2021 (36)
2022 (24)
2020 (14)
2019 (12)
2018 (11)
2016 (11)
2014 (11)
2017 (10)
2015 (7)
2013 (5)

Classification

bacteria (2)
fungi (1)

Study status

Recruiting (6)
Completed (3)
Not provided (2)
Not yet recruiting (1)

Study type

Transcription profiling by array (14)
Interventional (9)
RNA-seq of coding RNA (6)
Observational (3)
ChIP-seq (2)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (1026)
2021 (769)
2023 (746)
2025 (741)
2024 (657)
2020 (644)
2019 (454)
2018 (382)
2017 (279)
2016 (195)
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2014 (143)
2013 (102)
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2012 (68)
2011 (46)
2010 (24)
2008 (8)
2009 (8)
2007 (5)
2005 (2)
2004 (2)
2006 (1)
2002 (1)
2001 (1)

Lab affiliation

John Cijiang He, MD/PhD Division of Nephrology, Box 1243 Mount Sinai School of Medicine One Gustave L Levy Place, New York NY 10029 Tel: 212-659-1703, Fax: 212-987-0389 (1)
Department of Applied Chemistry, Chaoyang University of Technology, 168 Jifong East Road, Wufong, Taichung 41349, Taiwan (1)
Department of Analytical Chemistry and CAS Key Laboratory for Receptor Research, Shanghai Institute of Materia Medica (1)
NICM HRI, Western Sydney University (1)
Jiangsu Key Laboratory of Pediatric Respiratory Disease (1)
College of Integrated Chinese and Western Medicine, Fujian University of Traditional Chinese Medicine, Fuzhou, China (1)
Department of Integration of Chinese and Western Medicine, Peking University Cancer Hospital and Institute (1)
Guang'anmen Hospital of China Academy of Chinese Medical Sciences (1)
College of integrated traditional Chinese and Western medicine, Hebei Medical University,Shijiazhuang,China (1)
Faculty of Pharmacy, Zhejiang Pharmaceutical University, China (1)
Faculty of Chinese Materia Medica; Cultivation and identification of Chinese herbal medicine/Plant Pathology; Yunnan University of Traditional Chinese Medicine, Kunming, Yunnan, P.R. China (1)
College of Pharmacy, Gansu University of Chinese Medicine, Lanzhou, China (1)
College of Biomedical Engineering & Instrument Science, Zhejiang University (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (1)
Scientific Research Institute for Systems Biology and Medicine (1)
Medical University of Vienna Center for Physiology and Pharmacology (1)

Location

China (7)
Japan (2)
Taiwan (1)
Canada (1)
United States (1)

Keyword

Javanica oil emulsion injection (1)
Daikenchuto (1)
Postoperative ileus (1)
Pancreaticoduodenectomy (1)
Pharmaceutical Solutions (1)
Tailored TCM herbal decoction (1)
Chinese Herbal Medicine, Immunity, T Cell, Dendritic Cell (1)
Syndrome Distribution (1)
Irinotecan (1)

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A Combined LC-MS Metabolomics- and 16S rRNA Sequencing Platform to Assess Interactions between Herbal Medicinal Products and Human Gut Bacteria in Vitro: a Pilot Study on Willow Bark Extract

Herbal preparations are complex mixtures of natural products, many of which are able to reach the distal gut. There, they influence the microbial communities, and can be metabolized into bioactive metabolites. The aim of this study was to establish an interdisciplinary platform to unravel interactio...

2017-12-14 | MTBLS479 | MetaboLights

Dietary Supplementation with Fermented Chinese Herbal Compounds Enhance Lamb Growth Performance via Targeted Modulation of Gastrointestinal Microbiota

This study adopted the MRM wide-targeted metabolomics approach to detect metabolites in herbal plant samples. Using ultra-high performance liquid chromatography coupled with triple quadrupole mass spectrometry (QTrap 6500+), combined with specific extraction and separation methods, qualitative an...

2025-08-24 | MTBLS12888 | MetaboLights

herbal medicine metagenome

herbal medicine metagenome Raw sequence reads

PRJNA1222584 | ENA

herbal medicine

herbal medicine Raw sequence reads

PRJNA1371753 | ENA

Identification of chemotypes in bitter melon by metabolomics: a plant with potential benefit for management of diabetes in traditional Chinese medicine

INTRODUCTION: Bitter melon (Momordica charantia, Cucurbitaceae) is a popular edible medicinal plant, which has been used as a botanical dietary supplement for the treatment of diabetes and obesity in Chinese folk medicine. Previously, our team has proved that cucurbitanes triterp...

2019-10-24 | MTBLS701 | MetaboLights

Digital transformation of herbal medicine: Conversion to biological entity data using tonifying herbal medicine-induced transcriptome sequencing_SW1783_batchD

PRJNA1030368 | ENA

Digital transformation of herbal medicine: Conversion to biological entity data using tonifying herbal medicine-induced transcriptome sequencing_A549_batchE

PRJNA1024396 | ENA

Digital transformation of herbal medicine: Conversion to biological entity data using digestive herbal medicine-induced transcriptome sequencing_second_SW1783_batchC

PRJNA1070604 | ENA

Digital transformation of herbal medicine: Conversion to biological entity data using digestive herbal medicine-induced transcriptome sequencing_second_SW1783_batchA

PRJNA1070603 | ENA

Digital transformation of herbal medicine: Conversion to biological entity data using tonifying herbal medicine-induced transcriptome sequencing_SW1783_batchA

PRJNA1030347 | ENA