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MetabolomicsMassVision: An open-source end-to-end platform for AI-driven mass spectrometry image analysis

This dataset contains 10 Desorption Electrospray Ionization Mass Spectrometry Imaging (DESI-MSI) slides from cross-sections of surgically resected colorectal tissues with cancer and adjacent normal. The data is released with MassVision software platform for exploration and analysis of MSI data. P...

2025-09-19 | MTBLS12868 | MetaboLights
UnknownBIAS: Transparent reporting of biomedical image analysis challenges.
Not available
S-EPMC7441980 | biostudies-literature
TranscriptomicsImage based identification and targeting of cancer stem cells in pancreatic adenocarcinoma
Pancreatic intraepithelial neoplasia (PanIN) is a premalignant lesion that can progress to pancreatic ductal adenocarcinoma, a highly lethal malignancy marked by its late stage at clinical presentation and profound drug resistance. Here we developed novel fluorescent reporter mice that show that the...
ORGANISM(S): Mus musculus 
2016-06-15 | E-GEOD-73312 | biostudies-arrayexpress
MetabolomicsAnalysis of colorectal adenocarcinoma tissue samples by DESI mass spectrometry imaging
Ex vivo colorectal adenocarcinoma samples were analysed by desorption electrospray ionisation using an Orbitrap mass spectrometer. The samples were analysed in negative mode over the m/z range 600-1000. Some of the samples presented in this dataset were analysed as part of [1]. The study makes avail...
2016-04-28 | MTBLS289 | MetaboLights
ProteomicsMirror-image trypsin digestion and sequencing of D-proteins
The development of mirror-image biology systems and related applications is hindered by the lack of effective methods to sequence mirror-image (D-) proteins. Although natural-chirality (L-) proteins can be sequenced by bottom–up liquid chromatography–tandem mass spectrometry (LC–MS/MS), the sequenci...
ORGANISM(S): Escherichia coli 
2024-01-19 | PXD046228 | Pride
Total chemical synthesis D-trypsin D-protein sequencing Mirror-image biology Lc-ms/ms 
UnknownA community-based approach to image analysis of cells, tissues and tumors.
Not available
S-EPMC8761177 | biostudies-literature
UnknownDeep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length.
Not available
S-EPMC11605667 | biostudies-literature
UnknownDeep label fusion: A generalizable hybrid multi-atlas and deep convolutional neural network for medical image segmentation.
Not available
S-EPMC10009820 | biostudies-literature
ProteomicsDevelopment of mirror-image monobodies targeting the oncogenic BCR::ABL1 kinase
Mirror-image proteins, composed of D-amino acids, are an attractive therapeutic modality, as they exhibit high metabolic stability and lack immunogenicity. Development of mirror-image binding proteins is achieved through chemical synthesis of D-target proteins, phage display library selection of L-b...
ORGANISM(S): Homo sapiens (Human) 
2024-10-28 | PXD056009 | Pride
Monobodies Oncogenic bcr::abl1 kinase Mirror-image-monobodies 
UnknownAutomated cardiovascular magnetic resonance image analysis with fully convolutional networks.
Not available
S-EPMC6138894 | biostudies-literature
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