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GenomicsSELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)
SELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)
PRJNA604410 | ENA
UnknownThe KH domain facilitates the substrate specificity and unwinding processivity of DDX43 helicase.
Not available
S-EPMC7949032 | biostudies-literature
ProteomicsThe archaeal ATPase PINA interacts with the helicase Hjm via its carboxyl terminal KH domain remodeling and processing replication fork and Holliday junction
PINA is a novel ATPase and DNA helicase highly conserved in archaea, the third domain of life. The PINA from Sulfolobus islandicus (SisPINA) forms a hexameric ring, promotes Holliday junction (HJ) migration, and physically and functionally interacts with Hjc, the HJ specific endonuclease. Here, we s...
ORGANISM(S): Sulfolobus islandicus REY15A 
2018-10-22 | PXD008644 | Pride
The archaeal atpase pina Sulfolobus islandicus Holliday junction Replication fork 
OtherSELEX and ChIP/CLIP-Seq identification of nucleic acid sequences bound by the DDX43 KH domain (89 aa)
SELEX (systematic evolution of ligands by exponential enrichment), chromatin immunoprecipitation (ChIP)-seq, and crosslinking immunoprecipitation (CLIP)-seq showed that the DDX43 KH domain binds C/T rich DNA and U rich RNA.
ORGANISM(S): synthetic construct Homo sapiens 
2020-02-03 | GSE144647 | GEO
TranscriptomicsRNA sequencing–based determination of the RNA interactome of wild-type AKAP1 and its deletion mutants deficient for the KH or Tudor domain.
AKAP1 is highly expressed in glioblastoma and is required for tumor growth. We therefore analyzed the AKAP1 RNA interactome in glioblastoma cells. Native RNA immunoprecipitation followed by high-throughput sequencing (RIP-Seq) was performed in U87MG cells transiently expressing V5-tagged mouse wild-...
ORGANISM(S): Homo sapiens 
2026-09-01 | E-MTAB-16473 | biostudies-arrayexpress
GenomicsRNA sequencing–based determination of the RNA interactome of wild-type AKAP1 and its deletion mutants deficient for the KH or Tudor domain.
RNA sequencing–based determination of the RNA interactome of wild-type AKAP1 and its deletion mutants deficient for the KH or Tudor domain.
PRJEB105901 | ENA
UnknownKH domain proteins: Another family of bacterial RNA matchmakers?
Not available
S-EPMC8766902 | biostudies-literature
UnknownNucleic acid-binding KH domain proteins influence a spectrum of biological pathways including as part of membrane-localized complexes.
Not available
S-EPMC11261784 | biostudies-literature
UnknownStructure and RNA binding of the third KH domain of poly(C)-binding protein 1.
Not available
S-EPMC549569 | biostudies-literature
TranscriptomicsTranscription profiling of Arabidopsis wild type and flk mutants under different light regimes
Examination of Columbia-O wildtype and flk mutant tissues under the following conditions:; 7 day-old long-day grown, collected 1hr after dawn (exp3: GSM26236-GSM26241);; 16 day-old continuous-light-grown (exp2: GSM26230-GSM26235);; 16 day-old long-day grown, collected at 16hrs after dawn (exp1: GSM...
ORGANISM(S): Arabidopsis thaliana 
2008-06-11 | E-GEOD-1512 | biostudies-arrayexpress
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