lc-esi-ms/ms - OmicsDI

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Proteomics (1924)
Unknown (1073)
Metabolomics (506)
Genomics (16)
Other (6)
Transcriptomics (4)
Clinical (1)

Organisms

Saccharomyces cerevisiae (1839)
Rattus norvegicus (1839)
Homo sapiens (1839)
Staphylococcus aureus (11)
Homo sapiens (9)
Theobroma cacao (4)
Cutibacterium acnes KPA171202 (3)
standard reference vector pMCS (2)
Moorena bouillonii (2)
Carica papaya (2)
Streptococcus agalactiae ATCC 13813 (2)
Enterococcus faecalis (2)
Mus musculus (2)
Halobacterium salinarum NRC-1 (2)
Corynebacterium glutamicum (1)
Nitrospirillum amazonense (1)
Rattus norvegicus (1)
Remus (1)
Amycolatopsis sp. AA4 (1)
Trichoderma sp. (1)
Cyanobacteriota (1)
Rattus rattus (1)
Saccharomyces cerevisiae (1)
cellular organisms (1)
Capilliphycus salinus ALCB114379 (1)
Data (1)
Danio rerio (1)
Sus scrofa (1)
Bos taurus (1)
Gallus gallus (1)

Organisms

Nitrospirillum amazonense (1)
Xanthomonas campestris (1)
Haliotis discus hannai (1)
Raphanus sativus (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Bacillus velezensis (1)
Rattus norvegicus (1)
Homo sapiens (1)

Repository

pride (1839)
MetaboLights (425)
GNPS (79)
MassIVE (57)
iProX (21)
ENA (16)
jPOST (5)
PeptideAtlas (4)
geo (3)
GPMDB (2)
NODE (2)
PanoramaPublic (2)
biostudies-arrayexpress (1)

Tissue

Cell culture (364)
Brain (101)
Epithelial cell (86)
Plant cell (70)
Blood plasma (61)
Leaf (56)
Permanent cell line cell (55)
Liver (46)
Whole body (34)
Heart (32)
Blood serum (28)
Cell suspension culture (28)
Kidney (28)
Blood (28)
Fibroblast (26)
Lung (24)
Colon (21)
Saliva (19)
Blood cell (19)
Root (18)
Hepatocyte (18)
Urine (15)
Macrophage (15)
Stem cell (15)
T cell (15)
Cerebrospinal fluid (14)
Photosynthetic cell (14)
Embryo (13)
B cell (13)
Prokaryotic cell (12)

Disease

Breast cancer (42)
Disease free (37)
Colon cancer (20)
Cardiovascular system disease (12)
Brain cancer (11)
Acute leukemia (10)
Obesity (9)
Chagas disease (9)
Malignant neoplasm of ovary (9)
Cervix carcinoma (8)
Alzheimer's disease (8)
Cystic fibrosis (7)
Post-traumatic stress disorder (6)
Brain glioblastoma multiforme (6)
Prostate adenocarcinoma (6)
Prostate cancer (6)
Lymphoma (6)
Parkinson's disease (6)
Tuberculosis (6)
Glioblastoma (6)
COVID-19 (6)
Type 2 diabetes mellitus (6)
Hepatocellular carcinoma (5)
Non-small cell lung carcinoma (5)
Severe acute respiratory syndrome (5)
Osteosarcoma (5)
Chronic lymphocytic leukemia (5)
Melanoma (5)
Not Available (2)
Malignant neoplasm of colon (1)

Technology Type

Mass Spectrometry (1839)
Shotgun proteomics (973)
Bottom-up proteomics (361)
Mass spectrometry (308)
Data-dependent acquisition (191)
Affinity purification coupled with mass spectrometry proteomics (190)
Gel-based experiment (155)
Mass spectrometry assay (116)
Data-independent acquisition (89)
SWATH MS (79)
Top-down proteomics (77)
Chemical cross-linking coupled with mass spectrometry proteomics (33)
HDMSE (31)
SRM/MRM (30)
MSE (21)
All-ion fragmentation (12)
Mass spectrometry imaging (8)
DiaPASEF (8)
RNA mass spectrometry (7)
Metaproteomics (5)
Affinity proteomics (5)
NMR spectroscopy (3)
Proteogenomics (3)
Glycoproteomics (2)
Immunopeptidomics (2)
NMR spectroscopy assay (1)

Instrument Platform

MaXis (23)
Impact HD|MS:1002667 (17)
Q Exactive (10)
Orbitrap Fusion (9)
6530A Q-TOF LC/MS (8)
LC-ESI-QTof-MS/MS (4)
Amazon SL (Bruker Daltonics amaZon series) (4)
6560 Q-TOF LC/MS (4)
Q Exactive Plus (3)
6520A Quadrupole Time-of-Flight LC/MS (3)
Unknown (3)
TimsTOF Pro (3)
Agilent software|1000689 (2)
6470 Triple Quadrupole LC/MS (Agilent instrument model) (2)
DART-TOF-MS and LC-ESI-QTOF (2)
Easy n-LC and LTQ Orbitrap XL mass spectrometers (both from Thermo Fisher, San Jose, CA, USA) (2)
Nano-electrospray source, were used for nano LC-MS/MS (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
Orbitrap Astral (2)
TEMPUS TOF (1)
Orbitrap Q Exactive HF (1)
Maxis Impact Q-TOF (1)
AmaZon Speed (1)
TSQ Quantum Ultra (1)
6520B Q-TOF LC/MS (1)
Orbitrap Exploris 240 (1)
MicrOTOF-Q (1)
Q-Tof micro (1)
LTQ Orbitrap Elite (1)
7820A/5977B GC/MS (Agilent instrument model) (1)

Publication Date

2025 (357)
2026 (318)
2022 (294)
2024 (264)
2023 (253)
2021 (219)
2020 (175)
2019 (135)
2018 (130)
2017 (103)
2016 (69)
2015 (48)
2014 (31)
2013 (11)
2006 (3)
2012 (2)
2009 (1)
2010 (1)

UNIPROT ID/AC

Q921C1 (2)
P03899 (2)
E9PXG1 (2)
Q9JKF6 (2)
Q99PU5 (2)
Q99JP6-2 (2)
Q8R191 (2)
Q8CHX7 (2)
Q8CA95-3 (2)
Q8C8N2 (2)
Q8BLE7 (2)
Q8BG39 (2)
Q80XD3 (2)
Q80U23 (2)
Q80T41 (2)
Q7TPM6 (2)
Q6XE40 (2)
Q60771 (2)
Q50DZ7 (2)
Q3V1R3 (2)
Q3UHJ2 (2)
Q3TZE2 (2)
Q3TYL3 (2)
Q3TXX4 (2)
Q1MXF8 (2)
P31650 (2)
P23242 (2)
O35316 (2)
M1VMU3 (2)
G3X9Y1 (2)

ENSEMBL ID

ENSMUSP00000141097 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:16704 (74)
CHEBI:30769 (72)
CHEBI:16335 (71)
CHEBI:17368 (71)
CHEBI:15741 (66)
CHEBI:16708 (63)
CHEBI:16750 (63)
CHEBI:17295 (63)
CHEBI:16015 (61)
CHEBI:15891 (60)
CHEBI:17596 (60)
CHEBI:16828 (59)
CHEBI:7916 (58)
CHEBI:17568 (57)
CHEBI:17509 (57)
CHEBI:15756 (57)
CHEBI:15428 (56)
CHEBI:17154 (54)
CHEBI:15971 (54)
CHEBI:17895 (53)
CHEBI:17562 (52)
CHEBI:28044 (52)
CHEBI:15940 (52)
CHEBI:17750 (52)
CHEBI:16467 (52)
CHEBI:16865 (51)
CHEBI:17203 (51)
CHEBI:32816 (51)
CHEBI:16040 (50)
CHEBI:6650 (50)

Metabolite Name

Hypoxanthine (83)
Adenosine (73)
Uridine (73)
Inosine (72)
Uracil (71)
Adenine (71)
L-Phenylalanine (64)
Guanosine (62)
Betaine (61)
Creatine (60)
L-Tyrosine (59)
Xanthine (58)
Cytidine (57)
L-Proline (56)
Creatinine (55)
Thymine (54)
L-Histidine (54)
L-Leucine (53)
Taurine (52)
Thymidine (52)
Pantothenic acid (51)
L-Tryptophan (51)
L-Arginine (50)
Choline (50)
Guanine (50)
Xanthosine (49)
L-Methionine (48)
Spermidine (47)
Myristic acid (47)
L-Valine (47)

First Public Date

2024 (3)
2023 (3)
2022 (3)
2020 (2)
2019 (2)
2025 (1)
2017 (1)
2016 (1)

Modification

15.994915 (11)
42.010565 (9)
-17.026549 (8)
4-tetrahydrothiazine-3-carboxylic acid (6)
45.029395 (5)
58.005479 (4)
4x(15)N labeled L-arginine (4)
Not available (4)
57.021464 (3)
56.026215 (2)
59.036279 (2)
10.008269 (2)
Light form - site K (1)
47.036105 (1)
32.056407 (1)
Heavy form - site K (1)
4'-dihydroxyphenylalanine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
-18.010565 (1)
2x(15)N labeled L-lysine (1)
4 (1)
N6-dimethyl-L-lysine (1)
+3amu) (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (1)
Observational (1)

Release Date

2021 (126)
2022 (110)
2020 (98)
2023 (94)
2019 (82)
2025 (81)
2024 (73)
2018 (68)
2017 (61)
2016 (46)
2014 (38)
2015 (37)
2013 (29)
2011 (28)
2010 (25)
2009 (23)
2008 (17)
2012 (16)
2026 (12)
2007 (3)
2006 (3)
2005 (3)
2003 (1)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (20)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (20)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (16)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (11)
North Carolina State University (8)
University of Sydney (7)
Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
LMU Munich Plant Biochemistry and Physiology, Germany (6)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (6)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark (5)
Texas Tech University (5)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (5)
Proteomics of Stem Cells and Cancer, German Cancer Research Center (DKFZ), Heidelberg, Germany (5)
Proteomics Center, Erasmus MC (5)
Erasmus MC (5)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
Translational Biomarker Group, University of Geneva, Geneva, Switzerland (4)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (4)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (4)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (4)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Professor (4)

Location

Germany (1)

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