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MetabolomicsProfiling of lignin metabolites associated with fruit russeting

Broad-Targeted Metabolite Profiling of the Lignin Biosynthesis Pathway

2026-01-13 | MTBLS13669 | MetaboLights
TranscriptomicsA systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis
Inflorescence stems of 20 Arabidopsis thaliana mutants, each mutated in a single gene of the lignin biosynthetic pathway (PAL1 , PAL2, C4H, 4CL1, 4CL2, CCoAOMT1, CCR1, F5H1, COMT and CAD6, two mutant alleles each) were analyzed by microarrays.
ORGANISM(S): Arabidopsis thaliana 
2012-09-20 | E-MTAB-1284 | biostudies-arrayexpress
MetabolomicsFlavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves
Ginkgo leaves are always resources for flavonoids pharmaceutical industry. However, the effect of the elevation and tree age changes on flavonoid biosynthesis have not been detailly explored in Ginkgo leaves. In addition, whether these environmental pressures have similar effects on the biosynthesis...
2020-12-14 | MTBLS962 | MetaboLights
TranscriptomicsPtr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa
Laccases were proposed to catalyze the oxidative polymerization of monolignols. We identified 49 laccase gene models in Populus trichocarpa, of which 29 were predicted to be targets of ptr-miR397a. We overexpressed Ptr-MIR397a in transgenic P. trichocarpa. In each of all 9 transgenic lines tested, 1...
ORGANISM(S): Populus trichocarpa 
2014-01-17 | E-GEOD-54153 | biostudies-arrayexpress
ProteomicsProteomics of exovesicle-enriched fraction of Norway spruce
Exovesicle-enriched fraction was isolated from the culture medium of tissue-cultured cells of Norway spruce during extracellular lignin formation and when lignin formation was hindered by scavenging of H2O2 from the culture medium. Proteomic analysis was conducted to investigate the protein cargo of...
ORGANISM(S): Picea Abies (ncbitaxon:3329) 
2023-05-16 | MSV000091958 | MassIVE
ProteomicsProteomics of exovesicle-enriched fraction of Norway Spruce, non-EDTA-extracted samples
Exovesicle-enriched fraction was isolated from the culture medium of tissue-cultured cells of Norway spruce during extracellular lignin formation and when lignin formation was hindered by scavenging of H2O2 from the culture medium. Proteomic analysis was conducted to investigate the protein cargo of...
ORGANISM(S): Picea Abies (ncbitaxon:3329) 
2023-06-30 | MSV000092312 | MassIVE
GenomicsLignin Biosynthesis Transcripts in Sugarcane
Identification and sequencing of transcripts in the lignin biosynthesis pathway of sugarcane.
PRJEB29703 | ENA
TranscriptomicsMicroarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).
Internal aeration is crucial for root growth in waterlogged soil. A barrier to radial oxygen loss (ROL) can enhance long- distance oxygen transport via the aerenchyma to the root tip; a higher oxygen concentration at the apex enables root growth into anoxic soil. The ROL barrier is formed within the...
ORGANISM(S): Oryza sativa 
2014-06-26 | E-GEOD-58804 | biostudies-arrayexpress
MetabolomicsCOSY catalyzes trans-cis isomerization and lactonization in the biosynthesis of coumarins

Coumarins or 1,2-benzopyrones comprise a large class of secondary metabolites ubiquitously found in the plant kingdom. In many plant species, coumarins are particularly important for iron acquisition and plant defense. Here we show that COUMARIN SYNTHASE (COSY) is a key enzyme in the biosynthesis...

2019-08-08 | MTBLS692 | MetaboLights
MetabolomicsLignocellulose adaptation drives polysaccharide biosynthesis in Tremella fuciformis: Metabolomic and proteomic insights into CAZyme regulation
The polysaccharide content of T. fuciformis grown on a Cyclobalanopsis substrate (TY3) was significantly higher than those grown on a mixed substrate (TF1) made of wheat bran and cottonseed hull. Metabolomics and proteomics were used to assess the effects of the lignoce...
2025-07-08 | MTBLS12694 | MetaboLights
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