microscale - OmicsDI

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Unknown (4493)
Genomics (101)
Proteomics (58)
Transcriptomics (34)
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Methylation profiling (1)

Organisms

Chlamydomonas reinhardtii (33)
Enterococcus mundtii CRL35 (33)
Oncorhynchus tshawytscha (33)
Pseudomonas canadensis (33)
Human alphaherpesvirus 1 strain 17 (33)
Marchantia polymorpha subsp. ruderalis (33)
Methylocystis sp. (33)
Exiguobacterium sp. SH31 (33)
Amaranthus tricolor (33)
Porites pukoensis (33)
Porphyromonas gingivalis W83 (33)
Human betaherpesvirus 5 (33)
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Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
synthetic construct (1)
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1215364 (1)
Oryza sativa (1)

Organisms

Homo sapiens (22)
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marine metagenome (3)
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salt marsh metagenome (2)
hydrothermal vent metagenome (2)
rhizosphere metagenome (2)
Methanosarcina mazei Go1 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
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freshwater sediment metagenome (1)
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Disease

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Mass Spectrometry (33)
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SWATH MS (1)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (7)
6520A Quadrupole Time-of-Flight LC/MS (3)
Orbitrap Exploris 480 (3)
Matrix-assisted laser desorption-ionisation imaging MS - (2)
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2004 (4)
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2017 (3)
2015 (2)
2014 (1)
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2006 (1)
2005 (1)

UNIPROT ID/AC

Q8WTV0 (1)
P11597 (1)
Q05469 (1)
Q6PIU2 (1)
Q00341 (1)
P98155 (1)
P01130 (1)
P06858 (1)
P04180 (1)

CHEBI ID

CHEBI:16113 (2)
CHEBI:16335 (2)
CHEBI:61995 (1)
CHEBI:22868 (1)
CHEBI:17002 (1)
CHEBI:17984 (1)
CHEBI:20480 (1)
CHEBI:37600 (1)
CHEBI:71422 (1)
CHEBI:27013 (1)
CHEBI:27082 (1)
CHEBI:61572 (1)
CHEBI:89199 (1)
CHEBI:24168 (1)
CHEBI:17327 (1)
CHEBI:76341 (1)
CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:62005 (1)
CHEBI:19068 (1)
CHEBI:24848 (1)
CHEBI:33984 (1)
CHEBI:69081 (1)
CHEBI:30813 (1)
CHEBI:28260 (1)
CHEBI:86363 (1)
CHEBI:33511 (1)
CHEBI:22605 (1)
CHEBI:42111 (1)
CHEBI:18222 (1)

Metabolite Name

Pyroglutamic acid (3)
Nicotinic acid (3)
Lysine (3)
Malic acid (3)
Adenosine (3)
Proline (3)
Glutamic acid (3)
(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione (2)
Diisopropylamine (2)
1,10-Phenanthroline (2)
Ethyl isopropyl sulfide (2)
Methacrylamide (2)
(5Z,9Z,12Z)-octadeca-5,9,12-trienoic acid (2)
2-Hexenyl acetate (2)
1H-Imidazole-1-acetic acid (2)
N-Acetyl-Leu (2)
(2R,3R)-2-Aminooctadecane-1,3-diol (2)
Pyroglutamylproline (2)
Phenyl-Alanine (2)
D-Tyrosine (2)
1-Palmitoylphosphatidylcholine (2)
Rhodamine B (2)
2-Methylimidazole (2)
9-Arabinofuranosyladenine (2)
DL-Proline (2)
9,12-Octadecadiynoic acid (2)
Indoline (2)
2,4-Dimethylquinoline (2)
1-Cyclohexyl-4-(1,2-diphenylethyl)piperazine (2)
Baikiain (2)

First Public Date

2026 (19)
2023 (11)
2021 (11)
2025 (9)
2022 (8)
2014 (8)
2016 (7)
2020 (6)
2024 (5)
2019 (4)
2018 (2)
2017 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland Faculty of Science, University of Zürich, Zürich, Switzerland (2)
Faculty of Pharmacy, Hubei University of Chinese Medicine (2)
Centre for Membrane Interactions and Dynamics, Department of Biomedical Science, University of Sheffield, Sheffield (1)
Institute of Biochemistry II, Goethe University, Frankfurt, Germany (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland Faculty of Science, University of Zürich, Zürich, Switzerland (1)
University of Milan, DISFARM (1)
AG Proteomics & Bioanalytics - Institut für Experimentelle Medizin Christian-Albrechts-Universität zu Kiel 24105 Kiel, Germany (1)
Institute of Agriculture and Natural Resources, Food Science and Technology, University of Nebraska-Lincoln, NE, United States (1)
National Jewish Health (1)
Laboratory of Metabolism of Bioactive Lipids, Institute of Physiology, Czech Academy of Sciences, Prague, Czech Republic (1)
Kyung Hee University (1)
Univ. Grenoble Alpes, INSERM, CEA, UA13 BGE, CNRS, CEA, FR2048, 38000 Grenoble, France (1)
Neurotoxin Research Group, School of Life Sciences, The University of Technology Sydney, Ultimo, NSW 2007, Australia; kenneth.rodgers@uts.edu.au (K.J.R.) (1)
Institute of Drug Discovery Technology, Ningbo University (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Kidney Diseases Branch, NIDDK, NIH, US Government, United States (1)
School of Optometry, The Hong Kong Polytechnic University, Hong Kong (1)
University of Vienna (1)
Department of Chemistry and Biochemistry, Brigham Young University (lab head) (1)
Nuffield Department of Clinical Neuroscience (1)
Assistant Professor Department of Food Science & Technology Food Allergy Research & Resource Program University of Nebraska-Lincoln (1)
School of Pharmacy, Sungkyunkwan University, South Korea (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, USA (1)
West China Hospital, Sichuan University (1)
Hefei National Laboratory for Physical Sciences at Microscale, CAS key Laboratory of Innate Immunity and Chronic Disease, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (1)
UNC Chapel Hill (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland. Faculty of Science, University of Zürich, Zürich, Switzerland (1)
Michigan State University (1)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

4'-dihydroxyphenylalanine (1)

Study type

Transcription profiling by array (12)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (536)
2022 (494)
2021 (475)
2023 (462)
2024 (391)
2020 (371)
2019 (367)
2018 (275)
2017 (200)
2016 (185)
2015 (133)
2014 (115)
2026 (83)
2013 (83)
2010 (76)
2011 (68)
2009 (58)
2012 (48)
2008 (44)
2006 (15)
2007 (11)
2004 (6)
2005 (4)
2001 (4)
2002 (2)
2003 (1)
2000 (1)
1999 (1)

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Chemotaxis shapes the microscale organization of the ocean’s microbiome

The capacity of planktonic marine microorganisms to actively seek out and exploit microscale chemical hotspots has been widely theorized to affect ocean-basin scale biogeochemistry, but has never been examined comprehensively in situ among natural microbial communities. Here, using a field-based ...

2022-02-15 | MTBLS1980 | MetaboLights

An Optimized Miniaturized Filter Aided Sample Preparation Method for Sensitive Cross-linking Mass Spectrometry Analysis of Microscale Samples

Cross-linking mass spectrometry (XL-MS) is a powerful tool for elucidating protein structures and protein-protein interactions (PPIs) at the global scale. However, sensitive XL-MS analysis of mass-limited samples remains challenging, due to serious sample loss during sample preparation of the low-ab...

ORGANISM(S): Homo sapiens (Human)

2025-01-03 | PXD051322 | Pride