mse - OmicsDI

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Unknown (995)
Proteomics (465)
Metabolomics (142)
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Genomic (1)

Organisms

Allexis (456)
Arabidopsis thaliana (456)
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Leishmania major strain Friedlin (456)
Listeria monocytogenes (456)
Medicago truncatula (456)
Methylohalobius crimeensis 10Ki (456)
Homo sapiens (19)
Mus musculus (13)
Streptomyces coelicolor (6)
Metallosphaera sedula (4)
Metallosphaera sedula DSM 5348 (1)
Populus alba (1)
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Streptomyces coelicolor A3(2) (1)
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Organisms

Metallosphaera sedula (10)
Homo sapiens (6)
Mus musculus (4)
Fagopyrum esculentum (3)
Metallosphaera sedula DSM 5348 (1)
Fagopyrum esculentum subsp. esculentum (1)
Zoysia japonica (1)
Anopheles (1)
mouse gut metagenome (1)

Repository

pride (456)
MetaboLights (131)
biostudies-arrayexpress (42)
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geo (7)
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NODE (5)
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Tissue

Cell culture (56)
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Leaf (2)
Root (2)

Disease

Breast cancer (11)
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Disease free (5)
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Malignant neoplasm of ovary (4)
Paracoccidioidomycosis (3)
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Normal (1)
Endometrial Neoplasms (1)
Alzheimer's disease (1)
Benign prostatic hyperplasia (1)
Charcot-Marie-Tooth disease type 4F (1)

Technology Type

Mass Spectrometry (456)
MSE (222)
Shotgun proteomics (146)
HDMSE (113)
Mass spectrometry (100)
Bottom-up proteomics (42)
Gel-based experiment (31)
Mass spectrometry assay (30)
Affinity purification coupled with mass spectrometry proteomics (14)
All-ion fragmentation (14)
Data-independent acquisition (13)
Top-down proteomics (10)
Data-dependent acquisition (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
SWATH MS (7)
SRM/MRM (4)
Mass spectrometry imaging (2)
PAcIFIC (2)
RNA mass spectrometry (2)
NMR spectroscopy (1)
Affinity proteomics (1)
Glycoproteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (58)
Liquid Chromatography MS - negative - reverse phase (50)
Liquid Chromatography MS - positive - reverse-phase (16)
Liquid Chromatography MS - negative - reverse-phase (16)
Liquid Chromatography MS - positive - hilic (15)
Liquid Chromatography MS - negative - hilic (13)
Xevo G2 QTOF (Waters) (7)
Xevo G2 Q-Tof (6)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (6)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (4)
Vion IMS QTof (3)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - negative - HILIC (3)
Liquid Chromatography MS - positive - HILIC (3)
Illumina HiSeq 4000 (2)
SYNAPT G2-Si (2)
Synapt G2 HDMS (2)
SYNAPT G2 HDMS (Waters) (2)
Liquid Chromatography MS - Negative (LC-MS (Neg)) (2)
Liquid Chromatography MS - Positive (LC-MS (Pos)) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Xevo QTof MS (Waters) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
ScanArray 4000 [PerkinElmer] (1)
HILIC_Pos_SYNAPT-G2_Waters (1)
HILIC_Neg_SYNAPT-G2_Waters (1)
RP_Neg_SYNAPT-G2_Waters (1)
RP_Pos_SYNAPT-G2_Waters (1)

Publication Date

2025 (92)
2022 (80)
2024 (63)
2023 (63)
2026 (59)
2021 (57)
2020 (53)
2019 (37)
2018 (37)
2017 (19)
2016 (17)
2015 (14)
2014 (11)
2013 (11)
2010 (10)
2009 (5)
2012 (4)
2008 (4)
2006 (4)
2005 (3)
2007 (2)
2011 (2)

CHEBI ID

CHEBI:16828 (20)
CHEBI:28875 (16)
CHEBI:16919 (15)
CHEBI:17295 (15)
CHEBI:28716 (15)
CHEBI:17351 (15)
CHEBI:17368 (15)
CHEBI:30805 (14)
CHEBI:16467 (14)
CHEBI:15891 (14)
CHEBI:17895 (14)
CHEBI:17858 (13)
CHEBI:16566 (13)
CHEBI:16196 (13)
CHEBI:16704 (13)
CHEBI:17748 (12)
CHEBI:28842 (12)
CHEBI:16235 (12)
CHEBI:17568 (12)
CHEBI:17596 (12)
CHEBI:15756 (12)
CHEBI:72998 (11)
CHEBI:17203 (11)
CHEBI:15843 (11)
CHEBI:16015 (11)
CHEBI:16347 (11)
CHEBI:16414 (11)
CHEBI:27732 (11)
CHEBI:22470 (10)
CHEBI:17992 (10)

Metabolite Name

L-Tryptophan (19)
Thymidine (18)
L-Histidine (17)
Sulfate (16)
9,12,13-TriHOME (16)
Guanine (16)
Xanthine (16)
L-Tyrosine (16)
Inosine (16)
L-Olivosyl-oleandolide (15)
Azelaic acid (15)
Creatine (15)
L-Proline (14)
1,11-Undecanedicarboxylic acid (14)
Succinic acid (14)
Taurine (14)
Sebacic acid (14)
Guanosine (14)
Sucrose (14)
L-Phenylalanine (14)
Oleandolide (13)
Tobramycin (13)
Deoxyuridine (13)
11-Dehydro-thromboxane B2 (13)
DCMP (13)
Cholic acid (13)
Dodecanoic acid (13)
Dodecanedioic acid (13)
Uric acid (13)
Uridine (13)

First Public Date

2014 (14)
2016 (4)
2026 (3)
2021 (3)
2024 (2)
2020 (2)
2015 (2)
2025 (1)
2019 (1)

Modification

15.99491 (3)
57.02146 (3)
-17.0266 (2)
0.984 (2)
15.9949 (2)
203.0794 (2)
57.0215 (2)
Not available (2)
-0.984 (1)
-18.0106 (1)
127.0633 (1)
14.0156 (1)
14.0157 (1)
144.0996 (1)
144.102062 (1)
144.1021 (1)
144.1059 (1)
15.994915 (1)
162.0528 (1)
162.0538 (1)
188.033 (1)
210.1984 (1)
226.0776 (1)
227.127 (1)
229.014 (1)
236.1572 (1)
27.9949 (1)
283.2297 (1)
339.078 (1)
42.01056 (1)

Study status

Completed (4)
Active, not recruiting (3)
Terminated (1)
Withdrawn (1)
Recruiting (1)

Study type

Transcription profiling by array (22)
Interventional (10)
ChIP-chip by array (9)
ChIP-seq (4)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2025 (213)
2024 (137)
2022 (133)
2023 (126)
2021 (100)
2020 (54)
2018 (47)
2019 (44)
2017 (33)
2026 (22)
2016 (21)
2014 (19)
2015 (17)
2013 (16)
2012 (13)
2010 (11)
2011 (6)
2009 (5)
2008 (5)
2006 (5)
2005 (4)
2007 (2)
2004 (2)
2002 (1)
2001 (1)

Lab affiliation

School of Pharmacy, Sungkyunkwan University, South Korea (5)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (4)
Federal University of Goias (4)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (4)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark (4)
School of Life Sciences, The Chinese University of Hong Kong (4)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (3)
Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Philipps-University Marburg, 35043 Marburg, Germany (3)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
Proteomics and Metabolomics Unit, Monzino Cardiologic Center, IRCCS, Milan, Italy (3)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (3)
University of Southampton (3)
Weizmann Institute of Science, Israel (3)
Yale Cancer Biology Institute (3)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil. (2)
Applied Microbiology, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany (2)
Biomedical Research Center, Slovak Academy of Sciences (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
Chloé Martens, Ph.D Chercheuse Qualifiée - FRS.FNRS Group Leader Structure and Function of Biological Membranes - Chemistry Department chloemartenslab.com - sfmb.ulb.be Phone :+32 2 650 53 83 Université Libre de Bruxelles - Campus Plaine. Building BC, Room 1C4 110 - Boulevard du Triomphe, Accès 2 1050 Brussels - Belgium (2)
Clinical and Diagnostic Immunology, Department Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium (2)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (2)
Department of Chemistry & Chemical Biology, Northeastern University (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
Department of Microbial Physiology and Molecular Biology, Institute of Microbiology, University of Greifswald (2)
Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio 7, Vilnius, LT-10257, Lithuania (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Director, Proteome Center Rostock, University of Rostock, Germany (2)
ESALQ (2)

Location

United States (9)
Canada (6)
South Korea (4)
Italy (4)
Spain (4)
France (4)
Belgium (3)
Australia (3)
United Kingdom (3)
Denmark (2)
Poland (2)
Germany (2)
Hungary (2)
Japan (2)
Taiwan (1)
New Zealand (1)
Turkey (1)
Sweden (1)
China (1)
Austria (1)
Switzerland (1)

Keyword

Durvalumab (6)
Leucovorin (3)
Fluorouracil (3)
MSS-CRC (2)
Colorectal (2)
Bevacizumab (2)
Oxaliplatin (2)
Melanoma and other tumors (1)
Microsatellite (1)
AZD5305 (1)
Datopotamab deruxtecan (1)
Flourouracil (5-FU) (1)
TROPION-PanTumor03 (1)
Datopotamab Deruxtecan (Dato-DXd) (1)
Solid Tumours (1)
Antibody-drug conjugate (ADC) (1)
Trophoblast cell surface protein 2 (TROP2) (1)
Microsatellite stable (1)
Abiraterone Acetate (1)
AZD4635 (1)
Oleclumab (1)
Enzalutamide (1)
T-DXd (1)
DS-8201a (1)
Histology Agnostic (1)
IPH2201 (1)
Colorectal, colon, CRC, solid tumors, check point inhibitors, immunotherapy, metastatic (1)
Prednisone (1)
AZD8853 (1)
First-in-Human (1)

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Ocotea dataset project - UNIFAL

60 Ocotea crude plant extracts LC-HRMS/DIA-MSe metabolomics data

ORGANISM(S): Ocotea (ncbitaxon:63801)

MSV000093006 | MassIVE

Metallosphaera sedula strain:DSM 5348 Mse-1

Metallosphaera sedula DSM 5348 Mse-1

PRJNA262397 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-2b

Metallosphaera sedula DSM 5348 Mse-2b

PRJNA262401 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-2a

Metallosphaera sedula DSM 5348 Mse-2a

PRJNA262402 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-3b

Metallosphaera sedula DSM 5348 Mse-3b

PRJNA262405 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-3a

Metallosphaera sedula DSM 5348 Mse-3a

PRJNA262406 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-4

Metallosphaera sedula DSM 5348 Mse-4

PRJNA262407 | ENA

MSE quantified stroma proteome

Label-free protein quantification has developed into an attractive alternative to isotopic labeling for the quantification of proteins by mass spectrometry. Recently, the suite of label-free quantification strategies was expanded by LC-MSE–based absolute and relative protein quantification. We repor...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-04-14 | PXD000446 | Pride

MSE vs IM-MSE comparison - The experiment was conducted to compare the MSE and IM-MSE acquisiton modes

The experiment was conducted to compare the MSE and IM-MSE acquisiton modes as well as to find the optimal on column loading. This was done using 1DLC and cytosolic e coli digest.Raw data were processed and searched using Proteinlynx Global Server version 3.0. The following parameters were used to g...

ORGANISM(S): Escherichia coli

2013-02-18 | PXD000150 | Pride

E coli Mse Lc-ms/ms

MidBody Proteomics Mse raw data

This is the submission of the raw Mse waters data file obtained from Mid Body proteomics.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-05-20 | MSV000083826 | MassIVE

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