non-canonical rna-binding

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Metabolite Name

13-Ethenyl-5,7,9,11,13-pentamethyl-2-oxa-18-azahexacyclo[20.2.2.13,10.04,9.016,20.014,27]heptacosa-1(24),11,22,25-tetraene-15,17,19-trione (4)
(2S)-3-methyl-2-[[(2R)-5-oxopyrrolidine-2-carbonyl]amino]butanoic acid (4)
Phe-Val (4)
Serine (4)
Arginine (4)
5-Methoxybenzofuran (3)
4-Dimethylamino-butyric acid (3)
Methyl-alpha-aminoisobutyric acid (3)
Alloisoleucine, D- (3)
DL-alanine (3)
DL-Histidine (3)
4-Aminobutyric acid (GABA) (3)
Aminocyclopyrachlor (3)
N-(1-amino-1-oxo-3-phenylpropan-2-yl)-2-[[2-[(2-amino-3-phenylpropanoyl)amino]-4-methylsulfanylbutanoyl]amino]-5-(diaminomethylideneamino)pentanamide (3)
Budesonide (3)
Alanyl-gamma-glutamyl-lysine (3)
Imiprothrin (3)
Tryptophan Tryptophan dipeptide (3)
1-Trifluoromethoxyphenyl-3-(1-propionylpiperidine-4-yl)urea (3)
Carbobenzyloxyglycylglycyl-L-proline benzyl ester (3)
(10R,11R,12Z,17Z,19E,21S)-21-hydroxy-11,19-dimethyl-10-propan-2-yl-9,26-dioxa-3,15,28-triazatricyclo[23.2.1.03,7]octacosa-1(27),6,12,17,19,25(28)-hexaene-2,8,14,23-tetrone (3)
Andrographiside (3)
(E)-Piperolein A (3)
(+/-)14(15)-Eet-SI (3)
N-(1-Amino-3,3-dimethyl-1-oxobutan-2-yl)-1-pentyl-1H-indazole-3-carboxamide (3)
4-(Naphthalen-2-ylamino)-4-oxobutanoic acid (3)
Rosellichalasin (3)
Chlormadinone Acetate (3)
5-Methyl-2-oxo-1,3-oxazolidine-4-carboxylic acid (3)
Penicilloic V Acid (3)

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Classification

viruses (1)
protozoa (1)
bacteria (1)

Study type

Transcription profiling by array (100)
RNA-seq of coding RNA (53)
ChIP-seq (24)
RNA-seq of non coding RNA (17)
Other (7)
ChIP-chip by tiling array (5)
RNA-seq of coding RNA from single cells (4)
RNA-seq of total RNA (4)
Ribo-seq (3)
Human - High-throughput sequencing (2)
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2004 (1)

Lab affiliation

Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain (3)
CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India (2)
1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1Department of Chemistry, University of California, Riverside (1)
Aarhus University Institute of Molecular Biology and Genetics Universitetsbyen 81 8000 Aarhus Denmark (1)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK. (1)
Cellular Signaling and Nuclear Dynamics Program, Institut de Génétique et de Biologie Moléculaire et Cellulaire, UMR 7104, INSERM U964, 1 rue Laurent Fries, 67404 Illkirch, France. (1)
Centre for Genomic Regulation (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. University of Pompeu Fabra (UPF), Barcelona, Spain (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Biochemistry 1, Theodor Boveri-Institute, University of Würzburg, Am Hubland, 97074 Würzburg, Germany (1)
Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center; Vanderbilt-Ingram Cancer Center; Vanderbilt Center for Immunobiology, and Vanderbilt Institute for Infection, Immunology, and Inflammation, Nashville, TN, 37232-2363, USA., (1)
Dept.Pharmacology & Chemical Biology UPMC Hillman Cancer Center (1)
ETH Zurich Inst. f. Molekulare Systembiologie (1)
Eppley Institute for Research in Cancer University of Nebraska Medical Center (1)
Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (1)
Kids Neuroscience Centre, The Children's Hospital at Westmead, Faculty of Medicine and Health, University of Sydney (1)
MRC-University of Glasgow Centre for Virus Research Institute of Infection, Immunity and Inflammation College of Medical, Veterinary and Life Sciences University of Glasgow 464 Bearsden Road, Glasgow G61 1QH, Scotland (UK) (1)
NSERM U1242, University of Rennes, Centre de Lutte contre le cancer Eugène Marquis (1)
Proteomics and Metabolomics Unit, Basic Research Department, Children's Cancer Hospital 57357 Cairo, (CCHE-57357), Cairo 11562, Egypt. (1)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (1)
Rudolf Virchow Center University of Wuerzburg (1)
Senior Group Leader, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (1)
State Key Laboratory of Crop Stress Adaptation and Improvement, Academy for Advanced Interdisciplinary Studies, School of Life Sciences, Henan University (1)
Structural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada. Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada. Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario,Canada (1)
The Rockefeller University (1)

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Non-canonical RNA-binding of the histone lysine demethylase KDM5 through interactions with G-quadruplex sequences

RNA-binding proteins are important regulators of RNA biogenesis and function, and recent work shows that chromatin- and RNA-binding proteins can have regulatory roles in transcription. Several approaches have been developed to predict RNA-binding proteins and to identify them experimentally at large...

ORGANISM(S): Homo sapiens (Human)

2024-04-11 | PXD050767 | Pride

BOD1L mediates chromatin binding and non-canonical function of H3K4 methyltransferase SETD1A (RNA-seq)

PRJNA1080267 | ENA

Gene expression profiles of canonical and non-canonical NF-ÎºB signaling pathways in Hodgkinâ€™s lymphoma

Malignant Hodgkin's lymphoma (HL) cells are characterized by constitutive activation of the canonical as well as the non-canonical NF-ÎºB signaling cascades. We depleted subunit combinations corresponding to either canonical (p50/RelA) or non-canonical (p52/RelB) dimers in the HL cell line L-1236 an...

ORGANISM(S): Homo sapiens

2016-02-18 | E-GEOD-64232 | biostudies-arrayexpress

mtRF1 recognises non-canonical stop codons in human mitochondria

PRJNA896508 | ENA

Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation.

Not available

S-EPMC4027194 | biostudies-literature

Recognition of m6A RNA by the non-canonical reader IMP1

PRJNA885077 | ENA

FASTKD5 processes mitochondrial pre-mRNAs at non-canonical cleavage sites

PRJNA1230219 | ENA

Relocalization of retinoic acid receptors from non-canonical to canonical spaced binding elements during embryoid body differentiation

Retinoic Acid Receptors (RARs) bind RA-response elements in regulatory regions of their target genes. While canonical RAREs comprise direct repeats of the consensus 5’-RGKTCA-3’ sequence separated by 1, 2 or 5 nucleotides (DR1, DR2, DR5), we show that shortly after RA treatement of mouse embryoid bo...

ORGANISM(S): Mus musculus

2012-06-15 | E-GEOD-35599 | biostudies-arrayexpress

P5CS regulates translation by functioning as non-canonical RBP [LACE-seq]

PRJNA1178651 | ENA

P5CS regulates translation by functioning as non-canonical RBP [RNA-seq]

PRJNA1178653 | ENA

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