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MetabolomicsRegulatory Role of the VCL/ICAM-1 Pathway in Inflammatory Exudative Damage to the Gas-Blood Barrier in SARS-CoV-2 Infection: New Insights from the Omicron Paradigm
Infections by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), ranging from the initial Wildtype (WT) variant in Wuhan, China, to later variants including Omicron, have showcased a diverse spectrum of symptoms. This diversity underscores the need for ongoing exploration into the vir...
2025-02-28 | MTBLS12231 | MetaboLights
ProteomicsImmunological and Metabolic Characteristics of the Omicron Variants Infection
The Omicron variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), first identified in November 2021 in South Africa, has initiated the 5th wave of global pandemics. Here, we systemically examined immunological and metabolic characteristics of Omicron variants infection. We found ...
ORGANISM(S): Cercopithecus aethiops (Green monkey) (Grivet) 
2023-03-11 | PXD037955 | Pride
Cos7 cell hla class ι hepatitis b virus and sars-cov-2 peptides 
GenomicsHTGTS-Rep-Seq for Humanized Antibodies that Broadly Neutralize Omicron Sub-variants
During V(D)J recombination antibody diversity is enhanced by non-templated junctional modifications that generate immensely diverse heavy chain (HC) and light chain (LC) complementarity-determining 3 antigen-contact regions (CDR3s). We previously developed a mouse model that generates diverse antibo...
ORGANISM(S): Mus musculus 
2026-02-23 | E-MTAB-16106 | biostudies-arrayexpress
ProteomicsPeptide mapping and intact mass analysis of RBD protein from a SARS-CoV-2 omicron variant (RBDom)
RBD protein from the SARS-CoV-2 omicron variant (RBDom) was produced in Komagataella phaffii. Peptide mapping and intact mass analysis of RBDom were performed by LC/MS. Proteins were identified using BioPharma Finder software.
ORGANISM(S): Komagataella Phaffii 
2024-10-30 | PXD057342 | JPOST Repository
ProteomicsPlasma metabolomic characterization of SARS-CoV-2 Omicron infection
This study aimed to understand the host response to Omicron infections by performing metabolomic profiling of plasma.
ORGANISM(S): Homo Sapiens 
2023-02-24 | PXD040370 |
ProteomicsTotal Proteomics of SARS-CoV-2 variants
The ancestral SARS-CoV-2 strain that initiated the Covid-19 pandemic at the end of 2019 has rapidly mutated into multiple variants of concern with variable pathogenicity and increasing immune escape strategies. However, differences in host cellular antiviral responses upon infection with SARS-CoV-2 ...
ORGANISM(S): Homo sapiens (Human) 
2023-05-10 | PXD037265 | Pride
Delta Sars-cov-2 Omicron 
Proteomics4D-DIA Proteomics Uncovers New Insights into Host Salivary Response Following SARS-CoV-2 Omicron Infection
We applied a 4D dia-PASEF proteomic approach to investigate the salivary protein profile of individuals with early-to-acute SARS-CoV-2 Omicron infection. We combined proteomics and functional analyses with feature selection and ROC multivariate analysis to identify and assess salivary proteins for C...
ORGANISM(S): Homo sapiens (Human) 
2025-01-18 | PXD054133 | Pride
Proteomics Dia-pasef Mass-spectrometry Saliva Sars-cov-2 Omicron Covid-19 
GenomicsDetection of high level of co-infection and the emergence of novel SARS-CoV-2 delta-omicron and omicron-omicron recombinants in the epidemiological surveillance of Andalusia (Spain)
Detection of high level of co-infection and the emergence of novel SARS-CoV-2 delta-omicron and omicron-omicron recombinants in the epidemiological surveillance of Andalusia (Spain)
PRJEB54828 | ENA
ProteomicsDissection of Blood Ecosystem in SARS-CoV-2 Omicron Patients
Here, we systematically profiled clinical phenomes, transcriptomes, proteomes, metabolomes, and immune repertoire of blood cells or plasma in over 1000 specimens from SARS-CoV-2 Omicron patients across multiple disease phases.
ORGANISM(S): Homo Sapiens 
PXD045174 |
ProteomicsRegulatory Role of the VCL/ICAM-1 Pathway in Inflammatory Exudative Damage to the Gas-Blood Barrier in SARS-CoV-2 Infection: New Insights from the Omicron Paradigm
Infections by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), ranging from the initial Wildtype (WT) variant in Wuhan, China, to later variants including Omicron, have showcased a diverse spectrum of symptoms. This diversity underscores the need for ongoing exploration into the vir...
ORGANISM(S): Homo sapiens (Human) 
2025-05-07 | PXD054443 | Pride
Multi-omics  sars-cov-2  omicron  protein modification  n-glycosylation 
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