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Proteomicsdia-PASEF analysis of human amygdala in Alzheimer’s disease
dia-PASEF analysis of human amygdala in Alzheimer’s disease
ORGANISM(S): Homo sapiens (Human) 
2023-06-28 | PXD038322 | Pride
Dia-pasef Alzheimer Human Amygdala 
ProteomicsA hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer
Generation of a new library of targeted mass spectrometry assays for accurate protein quantification in triple negative breast cancer (TNBC) tissues. Primary tumor tissue lysates from 105 TNBC patients treated at Masaryk Memorial Cancer Institute (MMCI) in Brno, Czech Republic, were used to generate...
ORGANISM(S): Homo sapiens (Human) 
2024-05-31 | PXD047793 | Pride
Proteomics Mass spectrometry Data independent acquisition Assay library Triple-negative breast cancer 
ProteomicsRapid and ion mobility-resolved phosphoproteomics with dia-PASEF
Mass spectrometry-based phosphoproteomics has identified >150,000 post-translational phosphorylation sites in the human proteome. To disentangle their functional relevance, complex experimental designs that require increased throughput are now coming into focus. Here, we apply dia-PASEF on a trapped...
ORGANISM(S): Homo sapiens (Human) 
2022-10-26 | PXD033904 | Pride
Tims Technology Pasef Dia-pasef Phosphoproteomics Data-independent acquisition Ion mobility 
Proteomicsprm-PASEF and g-dia-PASEF analysis of plasma samples from colorectal cancer and control patients
Quantitative analysis of 10 CRC vs 10 control human plasma samples with the prm-PASEF and g-dia-PASEF acquisition methodes
ORGANISM(S): Homo sapiens (Human) 
2023-04-11 | PXD036594 | Pride
Pasef prm dia plasma colorectal cancer 
Unknowndia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Not available
S-EPMC9270362 | biostudies-literature
UnknownIncreasing taxonomic and functional characterization of host-microbiome interactions by DIA-PASEF metaproteomics.
Not available
S-EPMC10613666 | biostudies-literature
ProteomicsExpanding the Characterization of Microbial Ecosystems using DIA-PASEF Metaproteomics
Metaproteomics is gaining momentum in microbiome research due to the multi-dimensional information it provides. However, current approaches have reached their detection limits. We present a highly-sensitive metaproteomic workflow using the extra information captured by Parallel Accumulation-Serial F...
ORGANISM(S): Microbiota 
2023-05-04 | PXD040947 | Pride
Metaproteomics Dia-pasef Mouse Chronic pain Gut microbiome 
Proteomicsdia-PASEF HeLa dilution series 0.2ng - 200ng on Bruker timsTOF Pro 2
Different sample preparation methods were tested for HeLa proteome analysis. A sample obtained using sodium deoxycholate-based lysis allowed identification of the highest number of proteins. For this sample, a dilution series was acquired in triplicates ranging from 0.2ng to 200ng. All measurements ...
ORGANISM(S): Homo sapiens (Human) 
2022-06-20 | PXD029836 | Pride
Dia-pasef diapasef dia-nn hela 
UnknownAssessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry.
Not available
S-EPMC11480776 | biostudies-literature
Proteomicsdia-PASEF analysis of human amygdala in Parkinson’s disease
dia-PASEF analysis of human amygdala in Parkinson’s disease
ORGANISM(S): Homo sapiens (Human) 
2024-01-26 | PXD043503 | Pride
Amygdala Parkinson Human 
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