orphans - OmicsDI

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Unknown (237)
Transcriptomics (89)
Genomics (25)
Proteomics (20)
Metabolomics (6)
Other (3)
Methylation profiling (1)
Multiomics (1)

Organisms

Mus musculus (45)
Homo sapiens (43)
Alphavirus (8)
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Bacteria (8)
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Botrytis cinerea (8)
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Helicobacter pylori 26695 (1)
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Clostridium perfringens str. 13 (1)
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Burkholderia cenocepacia (1)
Saccharomyces cerevisiae (1)
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Drosophila melanogaster (1)
Arabidopsis thaliana (1)

Organisms

Homo sapiens (2)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (99)
MassIVE (8)
pride (8)
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geo (6)
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jPOST (2)

Tissue

Cell culture (5)
Embryonic stem cell (4)

Disease

Nurr1 lentivirus (1)
Papillary Carcinoma (1)
Healthy (1)
Normal (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (5)
Shotgun proteomics (5)
MSE (3)
ILLUMINA, Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Q Exactive (3)
NextSeq 500 (2)
Q Exactive HF (2)
Q Exactive Plus (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina Genome Analyzer Iix (1)
Axon GenePix 4000A scanning hardware (1)
Illumina NovaSeq X (1)
NA (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive GC-MS Orbitrap (Thermo Scientific) (1)
Liquid Chromatography Tandem MS (LC-MS/MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS (Positive)) (1)
HILIC_Pos_SYNAPT-G2_Waters (1)
HILIC_Neg_SYNAPT-G2_Waters (1)
RP_Neg_SYNAPT-G2_Waters (1)
RP_Pos_SYNAPT-G2_Waters (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB sciex) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2010 (16)
2015 (13)
2011 (12)
2012 (11)
2013 (10)
2008 (10)
2014 (9)
2025 (7)
2023 (6)
2026 (5)
2009 (5)
2020 (5)
2021 (4)
2019 (4)
2024 (3)
2022 (2)
2016 (2)
2007 (2)
2006 (2)
2017 (2)
2018 (1)

CHEBI ID

CHEBI:17533 (3)
CHEBI:17361 (3)
CHEBI:16704 (3)
CHEBI:16828 (3)
CHEBI:88543 (2)
CHEBI:68566 (2)
CHEBI:29028 (2)
CHEBI:34254 (2)
CHEBI:15638 (2)
CHEBI:15045 (2)
CHEBI:89234 (2)
CHEBI:42191 (2)
CHEBI:52897 (2)
CHEBI:17033 (2)
CHEBI:15918 (2)
CHEBI:17172 (2)
CHEBI:16450 (2)
CHEBI:15640 (2)
CHEBI:17256 (2)
CHEBI:73134 (2)
CHEBI:15721 (2)
CHEBI:16680 (2)
CHEBI:17202 (2)
CHEBI:17858 (2)
CHEBI:16040 (2)
CHEBI:17126 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:18406 (2)
CHEBI:27570 (2)

Metabolite Name

5,10-Methenyltetrahydrofolate (2)
5-Methyltetrahydrofolate (2)
Dihydrofolate (2)
2-(S-Glutathionyl)acetyl glutathione (2)
LysoPE(16:0/0:0) (2)
Glycine (2)
Thiamine (2)
Orotic acid (2)
Folinic acid (2)
Deoxyadenosine (2)
Biliverdin (2)
Taurine (2)
Xanthosine (2)
Deoxycholic acid (2)
Cholic acid (2)
Cis-Aconitic acid (2)
Adenosine (2)
Guanine (2)
Cytosine (2)
Riboflavin (2)
Isoleucine (2)
Deoxyguanosine (2)
Uric acid (2)
Cytidine (2)
Xanthine (2)
Guanosine (2)
Deoxycytidine (2)
Uridine (2)
Creatinine (2)
Creatine (2)

First Public Date

2023 (4)
2018 (1)
2017 (1)
2014 (1)
2013 (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (13)
ChIP-seq (7)
Comparative genomic hybridization by array (3)
Exome sequencing (3)
DNA-seq (3)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Methylation profiling by array (1)

Release Date

2015 (30)
2014 (20)
2013 (20)
2024 (19)
2012 (19)
2010 (19)
2023 (19)
2018 (19)
2025 (18)
2022 (18)
2019 (18)
2011 (16)
2021 (15)
2008 (14)
2017 (14)
2016 (12)
2020 (12)
2009 (11)
2007 (9)
2026 (5)
2006 (4)
2005 (2)
2004 (1)
2003 (1)
2001 (1)

Lab affiliation

Associate Professor Department of Biochemistry Room 220, Research and Innovation Centre, University of Regina, Regina, Saskatchewan S4S 0A2 (4)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
Institute of Biochemistry and Biophysics PAS (1)

Tags

xref:PubMed:37792516 (4)
xref:PubMed:30232197 (1)
xref:PubMed:20885785 (1)
xref:PubMed:21317217 (1)

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Comprehensive analysis of orphan CpG islands identifes novel promoters with conserved DNA methylation dynamics

We report the application of single molecule-based sequencing technology in combination with CXXC affinity purifcation (CAP-seq), MBD affinity purification (MAP-seq) and chromatin immunoprecipitation (ChIP-seq) to generate reciprocal methylation and chromatin modifcation maps in human and mouse. We ...

ORGANISM(S): Mus musculus

2010-10-04 | E-GEOD-21442 | biostudies-arrayexpress

Social support correlates with glucocorticoid concentrations in wild African elephant orphans.

Not available

S-EPMC9283395 | biostudies-literature

The influence of care types on the development of orphans--An empirical study from China.

Not available

S-EPMC11486387 | biostudies-literature

UBE2O is a quality control factor for orphans of multiprotein complexes.

Not available

S-EPMC5549844 | biostudies-literature

Global and regional estimates of orphans attributed to maternal cancer mortality in 2020.