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GenomicsMassively parallel reporter assay for programmed ribosomal frameshifting on designed sequence libraries
Massively parallel reporter assay for programmed ribosomal frameshifting on designed sequence libraries
PRJNA607955 | ENA
ProteomicsThe short isoform of the host antiviral protein ZAP acts as an inhibitor of SARS-CoV-2 programmed ribosomal frameshifting
Programmed ribosomal frameshifting (PRF) is a fundamental gene expression event in many viruses, including SARS-CoV-2. It allows production of essential viral structural and replicative enzymes that are encoded in an alternative reading frame. Despite the importance of PRF for the viral life cycle, ...
ORGANISM(S): Homo sapiens (Human) 
2021-11-25 | PXD029656 | Pride
Frameshifting Sars-cov-2 Translation regulation 
GenomicsProgrammed ribosomal frameshifting triggers translational stress to promote viral replication
Programmed ribosomal frameshifting triggers translational stress to promote viral replication
PRJNA1430871 | ENA
TranscriptomicsRiboSeq of BSR cells infected at MOI 3 with Theiler's murine encephalomyelitis virus, compared to mock-infected controls, harvested at 10 hpi
BSR cells were infected with the Cardiovirus B archetype, Theiler’s murine encephalomyelitis virus (TMEV), and mutants thereof, and subjected to ribosome profiling to analyse the viral translatome, frameshifting, and ribosome pausing events. Samples were harvested at 10 hpi by flash-freezing, withou...
ORGANISM(S): Mesocricetus auratus 
2021-11-10 | E-MTAB-9438 | biostudies-arrayexpress
OtherGenome-wide CRISPR screen for regulators of SARS-CoV-2 programmed ribosomal frameshifting
Genome-wide CRISPR-Cas9 knockout screens were performed in dual-fluorescent frameshifting reporter cell lines to identify human host factors for SARS-CoV-2 programmed ribosomal frameshfiting.
ORGANISM(S): Homo sapiens 
2022-12-22 | GSE206101 | GEO
Genomicsprogrammed ribosomal frameshift
programmed ribosomal frameshift Raw sequence reads
PRJNA310019 | ENA
GenomicsGenome-wide CRISPR screen for regulators of SARS-CoV-2 programmed ribosomal frameshifting
Genome-wide CRISPR screen for regulators of SARS-CoV-2 programmed ribosomal frameshifting
PRJNA849204 | ENA
UnknownHigh-throughput interrogation of programmed ribosomal frameshifting in human cells.
Not available
S-EPMC7297798 | biostudies-literature
UnknownRegulation of programmed ribosomal frameshifting by co-translational refolding RNA hairpins.
Not available
S-EPMC3639245 | biostudies-literature
UnknownTransactivation of programmed ribosomal frameshifting by a viral protein.
Not available
S-EPMC4040542 | biostudies-literature
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