proteomic signature

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Unknown (1108)
Proteomics (670)
Transcriptomics (264)
Genomics (159)
Other (17)
Metabolomics (9)
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Organisms

Homo sapiens (205)
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Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (1)
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Bemisia tabaci (1)
Coprococcus sp. ART55/1 (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Neurospora crassa (1)

Organisms

Homo sapiens (75)
Mus musculus (31)
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Rattus norvegicus (2)
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Danio rerio (1)
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Sus scrofa (1)

Repository

pride (456)
biostudies-arrayexpress (187)
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geo (104)
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Tissue

Cell culture (79)
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Microglial cell (8)
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Skeletal muscle (5)
Cell suspension culture (5)
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Blood (1)
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Disease

Colon cancer (22)
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Not Available (11)
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Non-small cell lung carcinoma (2)
Niemann-Pick disease (2)
Plasmodium falciparum malaria (2)
Brain glioblastoma multiforme (2)
Tuberculosis (1)

Technology Type

Mass Spectrometry (457)
Shotgun proteomics (253)
Bottom-up proteomics (103)
Data-dependent acquisition (44)
Data-independent acquisition (44)
SWATH MS (33)
Gel-based experiment (19)
Top-down proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (9)
SRM/MRM (6)
Mass spectrometry (5)
Olink affinity proteomics (4)
Affinity proteomics (4)
All-ion fragmentation (4)
DiaPASEF (3)
HDMSE (3)
MSE (2)
Mass spectrometry imaging (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Shotgun-MS (1)
Mass spectrometry (1)
Mass spectrometry assay (1)
ESI (1)

Instrument Platform

Q Exactive (24)
Instrument (11)
Orbitrap Fusion Lumos (10)
Orbitrap Fusion (9)
Illumina HiSeq 2500 (7)
LTQ Orbitrap Velos (7)
Illumina HiSeq 2000 (6)
LTQ Orbitrap Elite (6)
Q Exactive Plus (6)
NextSeq 500 (5)
Illumina HiSeq 4000 (4)
Q Exactive HF (4)
Illumina NovaSeq 6000 (3)
LTQ Orbitrap XL (3)
Orbitrap Eclipse (3)
ScanArray 4000 [PerkinElmer] (2)
NextSeq 2000 (2)
Q Exactive HF-X (2)
Synapt MS (2)
TripleTOF 6600 (2)
Orbitrap Exploris 480 (2)
TimsTOF Pro (2)
Nanodrop 2000c spectrophotometer (1)
GenePix 4000B Microarray Scanner (1)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
NextSeq 550 (1)
MALDI Synapt G2-S HDMS (1)
QE-HF-X (1)

Publication Date

2026 (114)
2025 (94)
2023 (89)
2022 (81)
2021 (80)
2014 (64)
2024 (62)
2020 (57)
2019 (45)
2018 (42)
2016 (33)
2013 (27)
2015 (24)
2017 (23)
2012 (21)
2010 (21)
2011 (19)
2008 (14)
2007 (12)
2009 (4)
2005 (2)
2006 (1)

UNIPROT ID/AC

7955.ENSDARP00000111175 (15)
Q6GQM1_DANRE (15)
F1QSE1_DANRE (15)
7955.ENSDARP00000107930 (15)
7955.ENSDARP00000111194 (15)
7955.ENSDARP00000107946 (15)
Q6DHI9_DANRE (15)
7955.ENSDARP00000106634 (15)
Q6NZZ2_DANRE (15)
A0A0R4IK21_DANRE (15)
7955.ENSDARP00000100434 (15)
E7F5A4_DANRE (15)
Q6GQM9_DANRE (15)
Q5BJ11_DANRE (15)
RS7_DANRE (15)
Q6PC80_DANRE (15)
Q803W9_DANRE (15)
Q803M8_DANRE (15)
F1QAU0_DANRE (15)
A0A140LG54_DANRE (15)
B8JIS5_DANRE (15)
ACTB1_DANRE (15)
7955.ENSDARP00000093747 (15)
F1R4A4_DANRE (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000105290 (15)
7955.ENSDARP00000111973 (15)
7955.ENSDARP00000093791 (15)
B3DJF8_DANRE (15)
7955.ENSDARP00000107028 (15)

ENSEMBL ID

ENSDARP00000125163 (16)
ENSDARP00000123922 (16)
ENSDARP00000116010 (16)
ENSDARP00000097050 (16)
ENSDARP00000087462 (16)
ENSDARP00000061164 (16)
ENSDARP00000000221 (16)
ENSDARG00000092233 (16)
ENSDARG00000092126 (16)
ENSDARG00000087390 (16)
ENSDARG00000079782 (16)
ENSDARG00000079564 (16)
ENSDARG00000075758 (16)
ENSDARG00000074289 (16)
ENSDARG00000071430 (16)
ENSDARG00000070083 (16)
ENSDARG00000068992 (16)
ENSDARG00000063908 (16)
ENSDARG00000058371 (16)
ENSDARG00000058358 (16)
ENSDARG00000056248 (16)
ENSDARG00000055996 (16)
ENSDARG00000055649 (16)
ENSDARG00000051783 (16)
ENSDARG00000046106 (16)
ENSDARG00000045180 (16)
ENSDARG00000045143 (16)
ENSDARG00000045014 (16)
ENSDARG00000044976 (16)
ENSDARG00000044975 (16)

CHEBI ID

CHEBI:28044 (3)
CHEBI:17822 (3)
CHEBI:26078 (3)
CHEBI:16708 (3)
CHEBI:16856 (3)
CHEBI:15891 (3)
CHEBI:16027 (3)
CHEBI:64803 (2)
CHEBI:17980 (2)
CHEBI:5132 (2)
CHEBI:28803 (2)
CHEBI:28279 (2)
CHEBI:17755 (2)
CHEBI:18300 (2)
CHEBI:22660 (2)
CHEBI:15356 (2)
CHEBI:28300 (2)
CHEBI:16449 (2)
CHEBI:26986 (2)
CHEBI:24898 (2)
CHEBI:18186 (2)
CHEBI:27570 (2)
CHEBI:86395 (2)
CHEBI:27266 (2)
CHEBI:29016 (2)
CHEBI:16964 (2)
CHEBI:40992 (2)
CHEBI:75555 (2)
CHEBI:25017 (2)
CHEBI:30653 (2)

Metabolite Name

Phosphoric acid (2)
Cadaverine (2)
Homoserine (2)
Cystathionine (2)
Malic acid (2)
Glutamic acid (2)
Aspartic acid (2)
Putrescine (2)
Valine (2)
Glutamine (2)
Histidine (2)
Alanine (2)
Lysine (2)
Threonine (2)
Cysteine (2)
Serine (2)
Glycine (2)
S-adenosylmethionine (2)
Glutathione (2)
Isoleucine (2)
Tyrosine (2)
Leucine (2)
Phenylalanine (2)
Adenine (2)
Arginine (2)
Spermidine (2)
Tryptophan (2)
Homospermidine (1)
Norspermidine (1)
Dehydroergosterol (1)

First Public Date

2026 (24)
2025 (23)
2023 (16)
2020 (14)
2024 (12)
2014 (10)
2022 (9)
2019 (8)
2021 (5)
2018 (5)
2017 (5)
2013 (2)
2016 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (8)
IRCCS Istituto G Gaslini (4)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (3)
Max Planck Institute of Biochemistry (3)
IFOM (3)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Division of Cell Signalling and Immunology, University of Dundee, Dundee, UK. (2)
Laboratory of Neuroimmunology, Neuroscience Research Centre, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne, Switzerland Service of Neurology, Department of Clinical Neurosciences, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne, Switzerland (2)
Bioanalytics, Leibnizinstitut für analytische Wissenschaften-ISAS-e.V., Germany (2)
Institute for Immunology, Tsinghua University; Beijing, China (2)
Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (2)
Biological Chemistry Department, David Geffen School of Medicine, UCLA (2)
EDyP (2)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (2)
Ist. G. Gaslini (2)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (2)
Department of Chemistry and Biomolecular Sciences Faculty of Science and Engineering Macquarie University Sydney, New South Wales, Australia (1)
Lehrstuhl für Ernährungsphysiologie, Technische Universität München (TUM), Gregor-Mendel-Str. 2, 85354 Freising, Germany; Phone: +498161-71-2385 (1)
National Key Laboratory of Medical Molecular Biology and Department of Immunology; Institute of Basic Medical Sciences; Chinese Academy of Medical Sciences (1)
Département d'immunologie et de biologie cellulaire, Faculté de médecine et des sciences de la santé, Université de Sherbrooke (1)
Department of Surgery Hollings Cancer Center (HO 512H) Medical University of South Carolina (1)
Proteomics and Genomics Facility (1)
Department of Biochemistry & Molecular Biology, New Jersey Medical School of Rutgers University [1] Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai [2] (1)
Professor, Department of Laboratory Medicine &Pathology Adjunct Professor, Department of Obstetrics, Gynecology& Women's Health Director, Ovarian Cancer Early Detection Program University of Minnesota Minneapolis, Minnesota, USA (1)
University College Dublin, School of Medicine, Conway Institute Belfield Dublin 4, Ireland. (1)
Grupo de Investigación de Reumatología (GIR). Instituto de Investigación Biomédica de A Coruña (INIBIC), Complexo Hospitalario Universitario de A Coruña (CHUAC), Sergas, A Coruña, Spain. (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

fungi (1)

Modification

Not available (3)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (106)
RNA-seq of coding RNA (45)
Unknown experiment type (6)
Other (4)
RNA-seq of coding RNA from single cells (4)
ChIP-seq (3)
Transcription profiling by SAGE (2)
Cell line - High-throughput sequencing (2)
Proteomic profiling by mass spectrometer (2)
RNA-seq of total RNA (2)
Animal - One-color microarray (1)
CLIP-Seq (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Antigen profiling (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (162)
2022 (156)
2023 (148)
2024 (133)
2021 (101)
2020 (96)
2019 (56)
2018 (49)
2015 (49)
2014 (49)
2016 (48)
2017 (42)
2011 (36)
2010 (35)
2012 (33)
2013 (30)
2026 (27)
2008 (16)
2007 (13)
2009 (11)
2006 (2)
2005 (2)
2003 (1)

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Mass Spectrometry-based Proteomic and Metabolomic profiling of serum samples for discovery and validation of Tuberculosis diagnostic biomarker signature

Not available

ORGANISM(S): Homo sapiens

ST002428 | MetabolomicsWorkbench

Metabolomic fingerprinting of bull spermatozoa for identification of fertility signature metabolites

The objective of the study was to identify the fertility-associated metabolites in bovine spermatozoa using liquid chromatography-mass spectrometry (LC-MS). Six Holstein Friesian crossbred bulls (three high-fertile and three low-fertile bulls) were the experimental animals. Sperm proteins were isola...

2021-12-07 | MTBLS1071 | MetaboLights

COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS

This SuperSeries is composed of the following subset Series: GSE23672: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AGILENT ARRAYS) GSE33948: COMPARATIVE TRANSCRIPTOMIC AND PROTEOMIC ANALYSIS OF LGR5+ve STEM CELLS AND THEIR DAUGHTERS (AFFYMETRIX ARRAYS...

ORGANISM(S): Mus musculus

2012-08-12 | E-GEOD-33949 | biostudies-arrayexpress

Global Phospho-Proteomic Profiling of Pathway-Level Molecular Alterations in Barrett’s Esophagus

In the present study, we applied deep, quantitative mass-spectrometry to clinical samples (Barrett’s esophagus and matched adjacent normal biopsies) to gain a mechanistic understanding of the molecular pathways associated with disease progression. From our rich LC/MS profiles, we identified a robust...

ORGANISM(S): Homo sapiens (Human)

2022-08-11 | PXD023293 | Pride

Clinically Relevant Proteomic Signature in Hepatocellular Carcinoma Patients with Macrovascular Invasion

Vascular invasion is considered as the critical risk factors for tumor recurrence of hepatocellular carcinoma (HCC). To reveal the molecular mechanisms underlying macrovascular invasion (MaVI) and metastasis in HCC, we performed an iTRAQ based proteomic study to identify notably dysregulated protein...

ORGANISM(S): Homo sapiens (Human)

2022-03-02 | PXD011846 | Pride

Hcc macorvascular invasion itraq urea cycle proteomic signature molecular mechanisms.

A proteomic signature of healthspan.

Not available

S-EPMC11230312 | biostudies-literature

A proteomic signature of healthspan.

Not available

S-EPMC12168021 | biostudies-literature

proteomic signature to predict ACT in CRC

High-throughput proteomics profiling-derived signature associated with chemotherapy response and survival for stage II/III colorectal cancer

ORGANISM(S): Homo Sapiens