rt-qpcr - OmicsDI

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Unknown (15404)
Genomics (1969)
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Other (36)
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Organisms

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Organisms

Homo sapiens (644)
Mus musculus (219)
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Bos taurus (21)
Sus scrofa (15)
Danio rerio (13)
Ovis aries (12)
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Thermothelomyces thermophilus ATCC 42464 (4)
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Mus (4)
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Hordeum vulgare (2)
pig gut metagenome (2)

Repository

ENA (1586)
biostudies-arrayexpress (1131)
geo (949)
pride (87)
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Tissue

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Colon cancer (4)
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Not Available (1)
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Neuroblastoma (1)
Plasmodium falciparum malaria (1)
Polycystic Kidney (1)
Polycystic liver disease (1)
Prostate adenocarcinoma (1)
Skin cancer (1)

Technology Type

Mass Spectrometry (87)
Shotgun proteomics (58)
Bottom-up proteomics (15)
Mass spectrometry assay (10)
Affinity purification coupled with mass spectrometry proteomics (10)
Mass spectrometry (8)
Data-dependent acquisition (7)
Data-independent acquisition (5)
Gel-based experiment (4)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
Top-down proteomics (2)
NMR spectroscopy (1)
DiaPASEF (1)
HDMSE (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (30)
Illumina HiSeq 2000 (20)
NextSeq 500 (19)
Illumina HiSeq 2500 (18)
Illumina HiSeq 4000 (11)
Illumina MiSeq (7)
Illumina Genome Analyzer IIx (4)
NextSeq 550 (4)
NextSeq 2000 (3)
Illumina Genome Analyzer II (2)
BD Influx Cell Sorter (1)
QuantStudio 12K Flex (1)
10X chemistry 3' v3 (1)
Omni ATAC kit (1)
IEO HPC (1)
See Description (1)
See Desciption (1)
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Manual extraction (1)
Clinical procedure using endoscopic equimpent (1)
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Quiagen Mini prep kit (1)
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Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
Agilent Technologies Microarray Scanner (1)
AB SOLiD 3 Plus System (1)

Publication Date

2013 (406)
2011 (238)
2025 (181)
2026 (148)
2024 (129)
2015 (122)
2021 (114)
2022 (111)
2016 (111)
2010 (104)
2014 (102)
2023 (98)
2020 (81)
2019 (78)
2012 (64)
2018 (61)
2017 (45)
2008 (14)
2009 (13)
2007 (6)
2006 (1)
2005 (1)

UNIPROT ID/AC

4513.MLOC_10050.1 (4)
4513.MLOC_11337.1 (4)
4513.MLOC_12451.3 (4)
4513.MLOC_12540.1 (4)
4513.MLOC_13014.1 (4)
4513.MLOC_1306.2 (4)
4513.MLOC_13372.1 (4)
4513.MLOC_14606.2 (4)
4513.MLOC_14794.1 (4)
4513.MLOC_14971.1 (4)
4513.MLOC_16236.1 (4)
4513.MLOC_16279.1 (4)
4513.MLOC_16373.1 (4)
4513.MLOC_16646.2 (4)
4513.MLOC_18019.1 (4)
4513.MLOC_19829.1 (4)
4513.MLOC_20396.2 (4)
4513.MLOC_20762.1 (4)
4513.MLOC_22034.1 (4)
4513.MLOC_23198.1 (4)
4513.MLOC_24214.1 (4)
4513.MLOC_24218.1 (4)
4513.MLOC_2612.1 (4)
4513.MLOC_26549.1 (4)
4513.MLOC_26766.1 (4)
4513.MLOC_28610.1 (4)
4513.MLOC_29257.1 (4)
4513.MLOC_29799.1 (4)
4513.MLOC_30920.1 (4)
4513.MLOC_33483.1 (4)

CHEBI ID

CHEBI:17822 (5)
CHEBI:26271 (5)
CHEBI:18237 (5)
CHEBI:22660 (5)
CHEBI:18186 (5)
CHEBI:26986 (5)
CHEBI:28300 (5)
CHEBI:25017 (5)
CHEBI:28044 (5)
CHEBI:29016 (5)
CHEBI:27897 (5)
CHEBI:25094 (4)
CHEBI:22653 (4)
CHEBI:27570 (4)
CHEBI:16811 (4)
CHEBI:24898 (4)
CHEBI:17154 (4)
CHEBI:27266 (4)
CHEBI:18211 (4)
CHEBI:17376 (4)
CHEBI:16449 (4)
CHEBI:17368 (4)
CHEBI:27389 (3)
CHEBI:15611 (3)
CHEBI:16680 (3)
CHEBI:18132 (3)
CHEBI:17858 (3)
CHEBI:16040 (3)
CHEBI:15356 (3)
CHEBI:16436 (3)

Metabolite Name

Choline (10)
Adenosine (8)
Betaine (7)
Hypoxanthine (7)
Histidine (6)
Leucine (6)
Trigonelline (6)
Methionine (6)
Arginine (6)
Cytosine (6)
Threonine (6)
Creatine (6)
Tryptophan (6)
Normorphine (5)
Valine (5)
Thymine (5)
Thiamine (5)
Sphingosine (5)
Niacinamide (5)
Diethanolamine (5)
Acetylcholine (5)
Taurine (5)
Lysine (5)
Tyrosine (5)
Serine (5)
Spermidine (5)
Histamine (5)
Riboflavin (5)
Proline (5)
Phenylalanine (5)

First Public Date

2025 (233)
2026 (227)
2024 (197)
2021 (135)
2022 (128)
2023 (123)
2014 (117)
2019 (93)
2020 (85)
2017 (69)
2018 (58)
2015 (47)
2016 (38)
2013 (35)
2010 (1)

Classification

bacteria (26)
viruses (4)
protozoa (2)
helminths (1)
fungi (1)

Study status

Recruiting (1)

Study type

ChIP-chip by tiling array (387)
Transcription profiling by array (277)
ChIP-seq (175)
RNA-seq of coding RNA (108)
Transcription profiling by RT-PCR (62)
RNA-seq of non coding RNA (28)
Other (16)
DNA-seq (11)
RNA-seq of total RNA (11)
MicroRNA profiling by array (8)
RNA-seq of coding RNA from single cells (8)
MicroRNA profiling by high throughput sequencing (5)
Human - High-throughput sequencing (4)
Animal - High-throughput sequencing (4)
Unknown experiment type (3)
ChIP-chip by array (3)
Genotyping by array (3)
Comparative genomic hybridization by array (3)
Human - One-color microarray (2)
Cell line - High-throughput sequencing (2)
RIP-seq (2)
Single nucleus RNA sequencing (2)
Methylation profiling by array (2)
RNA-seq of non coding RNA from single cells (1)
Animal - Single-cell sequencing (1)
RNAi profiling by array (1)
ATAC-seq (1)
Hi-C (1)
Other (1)

Release Date

2022 (2464)
2025 (2249)
2023 (2016)
2021 (1947)
2024 (1868)
2020 (1316)
2019 (868)
2018 (624)
2013 (551)
2017 (484)
2016 (458)
2015 (425)
2014 (311)
2011 (304)
2026 (256)
2010 (160)
2012 (157)
2009 (30)
2008 (29)
2007 (11)
2005 (5)
2006 (2)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (3)
Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria (2)
Martin-Luther University Halle-Wittenberg Institute of Pharmacy Department of Pharmaceutical Chemistry & Bioanalytics Charles Tanford Protein Center (2)
University of Wisconsin Madison (2)
AG Functional Proteomics, University Hospital Jena (1)
AnimalS health Territories Risks Ecosystems (ASTRE Unit CIRAD), France (1)
Aquatic Omics Lab, Science department, Ontario Tech University (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
CNRS, UMR7242, UMR7242, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (1)
CNRS, UMR7242, UMR7242, Université de Strasbourg, ESBS, Bld Sébastien Brant, F-67412 Illkirch, Strasbourg, France (1)
Center for Network Systems Biology, Boston University, USA (1)
Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea. School of Biological Sciences, Seoul National University, Seoul, Republic of Korea. (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona (BIST), Barcelona, Spain. Universitat Pompeu Fabra (UPF), Barcelona, Spain. (1)
Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong Special Administrative Region, China (1)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Chemistry, Duke University, USA (1)
Crop Research Institute, Prague, Czechia (1)
Departamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil (1)
Department of Biochemistry and Molecular Biology, School of Life Sciences, Central South University, No. 172, Tongzipo road, Yuelu District, Changsha 410013, Hunan Province, China (1)
Department of Biology, East Carolina University (1)
Department of Medical Biosciences, Pathology, Umeå University, Umeå, Sweden (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)
Department of Morphology, Institute of Biosciences of Botucatu, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil (1)
Department of Morphology, Institute of Biosciences of Botucatu, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil. (1)
Department of Pathology and Conservative Dentistry. Faculty of Dentistry. Centre for Biomedical Research and Innovation (CIIB). Periodontal Research Laboratory. University of the Andes, Santiago, Chile (1)
Department of Pharmacy, Baotou Medical College, Baotou, Inner Mongolia, China (1)
Department of Physiology & Pharmacology, University of Calgary (1)
Department of Plant Bioscience, Pusan National University, 1268-50 Samrangjin-ro, Samnangjin-eup, Miryang, 50463, Korea Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea. (1)

Location

China (1)

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Long non-coding RNA expression profiling in the NCI60 cancer cell line panel using high-throughput RT-qPCR

Long non-coding RNAs (lncRNAs) form a new class of RNA molecules implicated in various aspects of protein coding gene expression regulation. To study lncRNAs in cancer, we generated expression profiles for 1708 human lncRNAs in the NCI60 cancer cell line panel using a high-throughput nanowell RT-qPC...

ORGANISM(S): Homo sapiens

2016-06-29 | E-GEOD-80332 | biostudies-arrayexpress

Using RT-qPCR, proteomics and microscopy to unravel the spatio-temporal expression and subcellular localization of hordoindolines across development in barley endosperm

Hordeum vulgare (barley) hordoindolines (HINs), HINa, HINb1 and HINb2, are orthologous proteins of wheat puroindolines (PINs) that are small, basic, cysteine-rich seed-specific proteins and responsible for grain hardness. Grain hardness, is, next to its protein content, a major quality trait. In ba...

ORGANISM(S): Hordeum vulgare (Barley)

2018-07-02 | PXD009708 | Pride