Spatio-temporal

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Unknown (4494)
Genomics (881)
Transcriptomics (193)
Proteomics (43)
Other (23)
Models (19)
Methylation profiling (6)
Metabolomics (5)

Organisms

Caenorhabditis elegans (399)
Mus musculus (118)
Homo sapiens (65)
Arabidopsis thaliana (15)
Danio rerio (11)
Oryza sativa Japonica Group (9)
Zea mays (5)
Rattus norvegicus (5)
Drosophila melanogaster (5)
Sus scrofa (5)
Streptomyces coelicolor (4)
Gallus gallus (4)
Oryza sativa (4)
Xenopus laevis (3)
synthetic construct (3)
Escherichia coli (2)
Saccharomyces cerevisiae (2)
Talaromyces marneffei (2)
Humulus lupulus (2)
Chlorocebus sabaeus (2)
Canis lupus familiaris (2)
Salvelinus leucomaenis (1)
Oncorhynchus masou masou (1)
Helicobacter pylori (1)
Bacteria (1)
Salvia hispanica (1)
Lachancea kluyveri (1)
Vitis vinifera (1)
Bacillus subtilis (1)
Staphylococcus aureus (1)

Organisms

Mus musculus (99)
Homo sapiens (44)
Caenorhabditis elegans (27)
hot springs metagenome (15)
Arabidopsis thaliana (9)
Danio rerio (6)
Drosophila melanogaster (4)
Sus scrofa (3)
Oryza sativa Japonica Group (3)
Gallus gallus (3)
Polistes canadensis (2)
Mustela putorius furo (2)
Xenopus laevis (2)
Ciona robusta (2)
Zea mays (2)
aquatic metagenome (2)
Escherichia coli (2)
marine metagenome (2)
lake water metagenome (2)
rodent metagenome (1)
Halocynthia roretzi (1)
Labrus bergylta (1)
Eriophyoidea (1)
Humulus lupulus (1)
uncultured prokaryote (1)
salt lake metagenome (1)
Chikungunya virus (1)
Hordeum vulgare (1)
Mycoplasmopsis bovis (1)
Cryptococcus neoformans (1)

Repository

ENA (432)
geo (402)
biostudies-arrayexpress (257)
pride (30)
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EGA (11)
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MassIVE (4)
MetaboLights (4)
PAXDB (4)
iProX (2)
jPOST (2)
ExpressionAtlas (1)
GNPS (1)
PeptideAtlas (1)

Tissue

Brain (5)
Cell culture (5)
Endosperm (3)
Root (2)
Aleurone layer (2)
Blood (2)
Nerve cord (2)
Seed (2)
Lemma (1)
Leaf lamina (1)
Palea (1)
Leaf sheath (1)
Plant ovary (1)
Inflorescence (1)
Plant embryo (1)
Pistil (1)
Anther (1)
Stem (1)
B cell (1)
Blood cell (1)
Cell line cell (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Embryo (1)
Embryonic cell (1)
Embryonic stem cell (1)
Extracellular vesicle (1)
Fibroblast (1)
Kidney (1)
Liver (1)

Disease

Bacterial infectious disease (1)
Cancer (1)
Alzheimer's disease (1)
Diabetes mellitus (1)
Disease free (1)
Hereditary spastic paraplegia (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (16)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (5)
Mass spectrometry (4)
Data-dependent acquisition (4)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 1000 (4)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (2)
Q Exactive (2)
LTQ Orbitrap Velos (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - positive - reverse phase (2)
BD FACS Aria II (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
NextSeq 550 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
Orbitrap Exploris 240 (1)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (237)
2011 (125)
2012 (61)
2021 (41)
2024 (37)
2025 (30)
2023 (26)
2020 (23)
2015 (22)
2018 (19)
2022 (16)
2016 (16)
2014 (15)
2017 (14)
2026 (12)
2019 (12)
2010 (10)
2008 (4)
2009 (2)
2005 (1)
2006 (1)
2007 (1)

UNIPROT ID/AC

4513.MLOC_10050.1 (4)
4513.MLOC_11337.1 (4)
4513.MLOC_12451.3 (4)
4513.MLOC_12540.1 (4)
4513.MLOC_13014.1 (4)
4513.MLOC_1306.2 (4)
4513.MLOC_13372.1 (4)
4513.MLOC_14606.2 (4)
4513.MLOC_14794.1 (4)
4513.MLOC_14971.1 (4)
4513.MLOC_16236.1 (4)
4513.MLOC_16279.1 (4)
4513.MLOC_16373.1 (4)
4513.MLOC_16646.2 (4)
4513.MLOC_18019.1 (4)
4513.MLOC_19829.1 (4)
4513.MLOC_20396.2 (4)
4513.MLOC_20762.1 (4)
4513.MLOC_22034.1 (4)
4513.MLOC_23198.1 (4)
4513.MLOC_24214.1 (4)
4513.MLOC_24218.1 (4)
4513.MLOC_2612.1 (4)
4513.MLOC_26549.1 (4)
4513.MLOC_26766.1 (4)
4513.MLOC_28610.1 (4)
4513.MLOC_29257.1 (4)
4513.MLOC_29799.1 (4)
4513.MLOC_30920.1 (4)
4513.MLOC_33483.1 (4)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000072849 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141542 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:16856 (2)
CHEBI:28631 (2)
CHEBI:30746 (2)
CHEBI:15756 (2)
CHEBI:73623 (1)
CHEBI:80126 (1)
CHEBI:165593 (1)
CHEBI:186801 (1)
CHEBI:171675 (1)
CHEBI:81722 (1)
CHEBI:181415 (1)
CHEBI:138048 (1)
CHEBI:57756 (1)
CHEBI:169504 (1)
CHEBI:149481 (1)
CHEBI:15880 (1)
CHEBI:90010 (1)
CHEBI:138575 (1)
CHEBI:187768 (1)
CHEBI:79102 (1)
CHEBI:183028 (1)
CHEBI:187293 (1)
CHEBI:8589 (1)
CHEBI:187694 (1)
CHEBI:183544 (1)
CHEBI:89303 (1)
CHEBI:89245 (1)
CHEBI:89122 (1)
CHEBI:186750 (1)
CHEBI:173901 (1)

Metabolite Name

Benzoic acid (2)
Zeaxanthin diglucoside Zeaxanthin-beta-D-diglucoside (1)
X-206 (1)
Withasomnine (1)
UH-301 (1)
Tunicatachalcone (1)
TG(16:1(9Z)/18:0/18:4(6Z,9Z,12Z,15Z))[iso6] (1)
TG(14:1(9Z)/18:0/18:3(9Z,12Z,15Z))[iso6] (1)
TG(14:0/14:1(9Z)/20:1(11Z))[iso6] (1)
Tephrowatsin D (1)
Tambulin 3,5-diacetate (1)
SQMG(16:1(9Z)/0:0) (1)
SQMG(0:0/16:1(13Z)) (1)
Sophoraisoflavanone D (1)
Sigmoidin G (1)
Punaglandin 6 (1)
Piperaduncin A (1)
PIM1(19:2(9Z,12Z)/16:1(9Z)) (1)
PI-Cer(t20:0/26:0) (1)
PI(P-20:0/22:4(7Z,10Z,13Z,16Z)) (1)
PI(P-20:0/17:2(9Z,12Z)) (1)
PI(P-18:0/0:0) (1)
PI(P-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (1)
PI(P-16:0/15:1(9Z)) (1)
PI(21:0/20:3(8Z,11Z,14Z)) (1)
PI(21:0/0:0) (1)
PI(20:1(11Z)/0:0) (1)
PI(18:4(6Z,9Z,12Z,15Z)/18:4(6Z,9Z,12Z,15Z)) (1)
PI(14:0/18:2(9Z,12Z)) (1)
Phoenicoxanthin/ Adonirubin/ 3-Hydroxycanthaxanthin (1)

First Public Date

2024 (65)
2025 (47)
2021 (46)
2022 (36)
2023 (34)
2017 (32)
2020 (31)
2013 (30)
2026 (27)
2014 (20)
2015 (19)
2019 (16)
2018 (15)
2016 (13)
2012 (1)

Modelling Approach

Partial differential equation model (4)
Ordinary differential equation model (4)
Cellular potts model (3)
Dynamical characteristic (2)
Spatial characteristic (2)
Agent-based model (1)

Lab affiliation

Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria (3)
Shanghai Institute of Materia Medica (2)
Biomolecular Mass Spectrometry and Proteomics Laboratory, Utrecht University, Utrecht, The Netherlands (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Research UK Cambridge Institute University of Cambridge United Kingdom (1)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (1)
Department of Cell and Chemical Biology at the Leiden University Medical Center. (1)
Department of MBB Yale University MS & Proteomics Resource WM Keck Foundation Biotechnology Resource Lab (1)
Department of Molecular and Cellular Hemostasis Plasma Proteins, Sanquin Research, Amsterdam, The Netherlands (1)
Dept Biomedical Sciences, School of Medicine and Health Sciences, Institute of Neurosciences, Universitat de Barcelona, E-08036 Barcelona (1)
Dept. of Human Molecular Genetics and Biochemistry Sackler Faculty of Medicine Tel Aviv University Israel (1)
Director Dept. Proteomics and Signal Transduction Max Planck Institute of Biochemistry (1)
Drug Discovery Research Center (DDRC), Translational Health Science and Technology Institute (THSTI) NCR Biotech Science Cluster, 3rd Milestone, Faridabad – Gurgaon Expressway, Faridabad – 121001, Haryana India (1)
EMBL Grenoble, France (1)
Fondazione Pisana per la Scienza, ONLUS, San Giuliano Terme, Pisa, Italy (1)
Group leader, Professor Novo Nordisk Foundation Center for Protein Research University of Copenhagen Faculty of Health and Medical Sciences (1)
Institute for ophthalmic research University of Tuebingen (1)
Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, No. 1 Beigou Xiangshan, Beijing, 100193, China (1)
Laboratoire Reproduction et DÉveloppement des Plantes, ENS de Lyon (1)
Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany Institute of Clinical Chemistry, University Medical Center Göttingen, 37075 Göttingen, Germany (1)
Michel Salzet, Univ. Lille, Inserm, U-1192 - Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse-PRISM, F-59000 Lille, France (1)
PRISM - U1192 Universite de Lille FRANCE (1)
Radboud University Nijmegen, The Netherlands (1)
Structural Motility, UMR 144 CNRS/Curie Institute, PSL Research University, 26 rue d’Ulm, 75258 Paris cedex 05, France (1)
Univ. Lille, Inserm, U-1192 - Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse-PRISM, F-59000 Lille, France (1)
University of Cambridge (1)
University of Southern California (1)

IsPrivate

False (15)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (3)
viruses (2)
fungi (1)

Study type

ChIP-seq (197)
Transcription profiling by array (33)
RNA-seq of coding RNA (16)
ChIP-chip by tiling array (3)
Other (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (503)
2021 (476)
2023 (427)
2025 (388)
2020 (387)
2024 (363)
2019 (342)
2018 (302)
2017 (253)
2016 (250)
2013 (223)
2015 (221)
2014 (161)
2011 (128)
2012 (95)
2026 (56)
2010 (55)
2009 (39)
2008 (29)
2007 (16)
2006 (11)
2005 (7)
2002 (7)
2004 (4)
2003 (4)
2001 (1)
2000 (1)

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Spatio-temporal analysis deciphers the energy metabolism disorders in depression based on stable isotope-resolved metabolomics

The severe harm of depression on human life has attracted great attention. However, due to its unclear and extremely complex pathogenesis, the efficacy of existing marketed antidepressants is far from satisfactory. Consequently, it is urgent to understand the pathogenesis of depression from novel pe...

ORGANISM(S): Rattus Rattus

PXD066143 |

Spatio-temporal evolution of COVID-19 in the Republic of Ireland and the Greater Dublin Area (March to November 2020): A space-time cluster frequency approach.

Not available

S-EPMC9840564 | biostudies-literature

Validating a spatio-temporal model of observed neighborhood physical disorder.

Not available

S-EPMC9193978 | biostudies-literature

Spatio-temporal transcriptome of the human brain

The development of the human brain is a complex and precisely regulated process that unfolds over a protracted period of time. Human-specific features of this process, especially the ways in which highly complex neural circuits of the cerebral cortex form, are likely to be important factors in the e...

ORGANISM(S): Homo sapiens

2011-10-26 | E-GEOD-25219 | biostudies-arrayexpress

Kolbe2019 - Spatio-temporal liver zonation

Metabolism of the adult liver in mice and human is spatially zonated with hepatocytes along the axis from each portal vein to the nearest central vein expressing enzymes in a zonated manner. Upstream of that functional zonation, interactions of Wnt and Hh signaling are orchestrating and self-organiz...

2021-09-30 | MODEL2009110001 | BioModels

A Bayesian spatio-temporal analysis on racial disparities in hypertensive disorders of pregnancy in Florida, 2005-2014.

Not available

S-EPMC6631343 | biostudies-literature

Transcriptomic dynamics control rapid transition of core crop functions in 'lactating' pigeon

Pigeons (Columba livia) are widely kept as domesticated pets worldwide, and may have adapted to captivity through the evolutionarily specialized ability to produce ‘milk’ in the crops of both male and female parents via rapid proliferation and shedding of lipid- and protein-enriched epithelial ce...

2023-02-13 | MTBLS5195 | MetaboLights

Spatio-temporal model to investigate COVID-19 spread accounting for the mobility amongst municipalities.

Not available

S-EPMC9904848 | biostudies-literature

Spatio-temporal variations in COVID-19 in relation to the global climate distribution and fluctuations.

Not available

S-EPMC7973081 | biostudies-literature

A method for the factor-specific spatio-temporal control of splicing

PRJNA756193 | ENA