sp3 - OmicsDI

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Proteomics (1693)
Unknown (1578)
Genomics (66)
Transcriptomics (46)
Metabolomics (13)
Other (1)

Organisms

Schizosaccharomyces pombe (1649)
Saccharomyces cerevisiae (1649)
Staphylococcus aureus (1649)
Rattus norvegicus (1649)
Homo sapiens (1649)
Shigella flexneri (1649)
Allexis (1649)
Shigella (1649)
Listeria monocytogenes (1649)
Arabidopsis thaliana (1649)
Mus musculus (1649)
Sinorhizobium meliloti BL225C (1648)
Sus scrofa domesticus (1648)
Escherichia coli (1648)
Zea mays (1648)
Medicago truncatula (1648)
Entamoeba histolytica HM-1:IMSS-A (1648)
Solanum tuberosum (1648)
Methylohalobius crimeensis 10Ki (1646)
Meleagris gallopavo (1646)
Homo sapiens (39)
Mus musculus (30)
Saccharomyces cerevisiae (4)
Schizosaccharomyces pombe (3)
Daphnia pulex (1)
Oryza sativa Indica Group (1)
Bacillus subtilis (1)
Pinctada fucata (1)
Bos taurus (1)
cellular organisms (1)

Organisms

Neocallimastix lanati (nom. inval.) (16)
Mus musculus (15)
Homo sapiens (10)
Syntrophaceticus schinkii (1)
Streptococcus pneumoniae SP3-BS71 (1)
Streptococcus pyogenes SP3-LAU (1)
Campylobacter fetus subsp. testudinum Sp3 (1)
Sphingomonas sp. SP3 (1)
Halocella sp. SP3-1 (1)
Karenia brevis (1)
soil metagenome (1)

Repository

pride (1649)
ENA (54)
biostudies-arrayexpress (38)
MassIVE (23)
geo (21)
MetaboLights (12)
jPOST (11)
iProX (8)
EGA (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (309)
Epithelial cell (104)
Brain (90)
Permanent cell line cell (73)
Liver (62)
T cell (50)
Blood plasma (48)
Kidney (44)
Lung (43)
Blood (40)
Heart (36)
Cell suspension culture (36)
Blood serum (25)
Whole body (24)
Colon (24)
Stem cell (21)
Hepatocyte (21)
Macrophage (20)
Fibroblast (19)
Skin (17)
Leaf (17)
Lymph node (16)
Plant cell (16)
Blood cell (16)
Primary cell (15)
Embryonic stem cell (14)
Bone marrow (13)
B cell (13)
Spleen (12)
JURKAT cell (11)

Disease

Breast cancer (36)
Disease free (34)
Colon cancer (21)
Acute leukemia (19)
Cardiovascular system disease (12)
Parkinson's disease (12)
Severe acute respiratory syndrome (11)
Alzheimer's disease (11)
Non-small cell lung carcinoma (10)
Melanoma (10)
Brain cancer (10)
COVID-19 (8)
Osteosarcoma (7)
Lymphoma (7)
Cervix carcinoma (7)
Prostate adenocarcinoma (6)
Lung cancer (6)
Type 2 diabetes mellitus (6)
Amyotrophic lateral sclerosis (5)
Malignant neoplasm of ovary (5)
Brain small vessel disease (4)
Niemann-Pick disease (4)
Obesity (4)
Chronic lymphocytic leukemia (4)
Acute myeloid leukemia (4)
Pancreatic cancer (4)
Glioblastoma (4)
Cataract (3)
Age related macular degeneration (3)
Not Available (1)

Technology Type

Mass Spectrometry (1649)
Shotgun proteomics (713)
Bottom-up proteomics (543)
Data-dependent acquisition (335)
Data-independent acquisition (286)
Affinity purification coupled with mass spectrometry proteomics (106)
SWATH MS (63)
Top-down proteomics (32)
Chemical cross-linking coupled with mass spectrometry proteomics (27)
DiaPASEF (22)
All-ion fragmentation (11)
Affinity proteomics (8)
Mass spectrometry (7)
HDMSE (7)
Mass spectrometry assay (5)
SRM/MRM (5)
Gel-based experiment (5)
Metaproteomics (4)
MSE (3)
Proteogenomics (2)
Mass spectrometry imaging (2)

Instrument Platform

TimsTOF Pro (4)
Orbitrap Exploris 480 (4)
Gas Chromatography MS - positive (4)
Illumina HiSeq 4000 (3)
TimsTOF fleX (2)
Orbitrap Astral (2)
LTQ Orbitrap Velos (2)
Q Exactive (2)
Q Exactive Plus (2)
Orbitrap Fusion Lumos (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Instrument (1)
SYNAPT G2-Si (1)
Orbitrap Fusion ETD (1)
NanoACQUITY UPLC (1)
Synapt G2-S HDMS (1)
Orbitrap Eclipse (1)
TimsTOF Pro 2 (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
NEG_UPLC-QTOF-MS (1)
POS_UPLC-QTOF-MS (1)
Gas Chromatography MS - positive - low-polarity (1)
Liquid Chromatography MS - alternating (1)

Publication Date

2025 (411)
2026 (389)
2024 (259)
2023 (192)
2022 (171)
2021 (130)
2020 (79)
2019 (46)
2018 (27)
2014 (9)
2016 (7)
2012 (7)
2017 (7)
2015 (5)
2010 (5)
2008 (5)
2013 (4)
2009 (2)
2007 (2)
2006 (1)

CHEBI ID

CHEBI:17203 (4)
CHEBI:16414 (4)
CHEBI:17895 (4)
CHEBI:28822 (3)
CHEBI:18308 (3)
CHEBI:15901 (3)
CHEBI:15746 (3)
CHEBI:33198 (3)
CHEBI:17268 (3)
CHEBI:16857 (3)
CHEBI:17053 (3)
CHEBI:18012 (3)
CHEBI:30915 (3)
CHEBI:17295 (3)
CHEBI:26078 (3)
CHEBI:16828 (3)
CHEBI:17351 (3)
CHEBI:27432 (3)
CHEBI:75568 (2)
CHEBI:187908 (2)
CHEBI:28860 (2)
CHEBI:90765 (2)
CHEBI:28824 (2)
CHEBI:39420 (2)
CHEBI:28866 (2)
CHEBI:28941 (2)
CHEBI:76341 (2)
CHEBI:86363 (2)
CHEBI:28878 (2)
CHEBI:17992 (2)

Metabolite Name

D-Glucose (3)
Adenosine (3)
L-Isoleucine (3)
Alloxanoic acid (2)
N-Acetyl-D-Glucosamine (2)
L-leucine (2)
L-quinate (2)
L-ornithine (2)
3''-deamino-3''-oxonicotianamine (2)
GABA (2)
Glycine (2)
L-threonine (2)
L-valine (2)
Phthalic acid (2)
Uracil (2)
L-tyrosine (2)
L-phenylalanine (2)
L-proline (2)
Spermine (2)
L-Lysine (2)
L-Proline (2)
5-Hydroxyindoleacetic acid (2)
Benzoic acid (2)
L-Asparagine (2)
Asparagine (2)
Serine (2)
Guanine (2)
Phenylalanine (2)
L-Tryptophan (2)
L-Glutamine (2)

First Public Date

2020 (18)
2019 (8)
2014 (8)
2013 (5)
2023 (4)
2015 (3)
2026 (2)
2024 (2)
2025 (1)
2022 (1)
2018 (1)
2017 (1)

Classification

bacteria (3)

Modification

4'-dihydroxyphenylalanine (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (15)
ChIP-seq (7)
RNA-seq of coding RNA (5)
ChIP-chip by array (3)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
CLIP-seq (1)
Antigen profiling (1)
Other (1)
Proteomic profiling by array (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (191)
2022 (181)
2024 (173)
2023 (172)
2021 (167)
2020 (127)
2019 (121)
2018 (102)
2017 (86)
2016 (41)
2015 (40)
2014 (36)
2026 (35)
2013 (24)
2012 (21)
2010 (18)
2009 (18)
2011 (14)
2008 (13)
2006 (7)
2007 (7)
2005 (6)
2004 (5)
2003 (4)
2002 (3)
2000 (2)
2001 (1)

Lab affiliation

Proteomics facility, Central Science Laboratory, University of Tasmania (22)
European Molecular Biology Laboratory (20)
Umea University (14)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (14)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (12)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (9)
Medical University of Vienna (9)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (8)
The University of Melbourne (8)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden (7)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA (6)
University Medicine Greifswald (6)
Merck (6)
Cellzome (6)
Professor at Department of Pharmacy, Drug Delivery, Uppsala University (6)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (6)
Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Biology, Cambridge, MA, USA (6)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (5)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (5)
Professor (5)
Cellzome, a GSK company (5)
Institute for Systems Biology (5)
Harvard Medical School (5)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (5)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (5)
Baker Heart and Diabetes Institute (5)
University Hospital Cologne (5)
Distinguished Professor Associate Chair for Undergraduate Affairs (4)
Biological Chemistry Department David Geffen School of Medicine UCLA (4)

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Transcription profiling of mouse heart from E12.5 wildtype- and Sp3 animals

Mice lacking the zinc finger transcription factor Specificity protein 3 (Sp3) die prenatally in the C57Bl/6 background. To elucidate the cause of mortality we analyzed the potential role of Sp3 in embryonic heart development. Sp3 null hearts display defective looping at E10.5, and at E14.5 the Sp3 n...

ORGANISM(S): Mus musculus

2008-06-17 | E-GEOD-9124 | biostudies-arrayexpress

PEPPI-SP3: Robust and Simple Sample Prefractionation Workflow for Top-Down Proteomics

In this study, we developed a complete, robust, and simple sample preparation workflow named PEPPI-SP3 for top-down proteomics by combining PEPPI-MS with the magnetic bead-based protein purification approach used in SP3 (single-pot, solid-phase-enhanced sample preparation), now one of the standard s...

ORGANISM(S): Homo Sapiens (human)

2025-01-23 | PXD056413 | JPOST Repository

Streptococcus pyogenes SP3-LAU

Streptococcus pyogenes SP3-LAU Genome sequencing and assembly

PRJNA215878 | ENA

Halocella sp. SP3-1

Genome sequencing and assembly of Halocella sp. SP3-1

PRJNA493542 | ENA

SP1/2/3 and NfY cooccurency in MEFs

Investigation of the binding behaviour of Sp1, Sp2, Sp3 and NF-ya, NF-yb and NF-yc in mouse embryonic fibroblasts and of Sp1, Sp2 and Sp3 in HEK-293 cells reveals distinct binding of the seemingly similar transcription factors Sp1/3 and Sp2.

ORGANISM(S): Mus musculus

2015-01-30 | E-MTAB-2970 | biostudies-arrayexpress

Neocallimastix lanati (nom. inval.) strain:sp3

Neocallimastix lanati sp3 Transcriptome - S3_RNA_MC_RCG

PRJNA677810 | ENA

Neocallimastix lanati (nom. inval.) strain:sp3

Neocallimastix lanati sp3 Transcriptome - Cellobiose_RNA_MC_1

PRJNA677796 | ENA

Neocallimastix lanati (nom. inval.) strain:sp3

Neocallimastix lanati sp3 Transcriptome - Filterpaper_RNA_MC_2

PRJNA677800 | ENA

Neocallimastix lanati (nom. inval.) strain:sp3