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Proteomics
(1942)
Unknown
(558)
Genomics
(38)
Transcriptomics
(8)
Metabolomics
(8)
Other
(2)
Multiomics
(1)
Organisms
Homo sapiens
(84)
Mus musculus
(46)
Rattus norvegicus
(12)
Rattus rattus
(7)
Bos taurus
(6)
Gallus gallus
(5)
Oryza sativa
(3)
Staphylococcus aureus
(3)
Sus scrofa domesticus
(3)
Bambusa grandis
(2)
Bambusa pervariabilis
(2)
Capra hircus
(2)
Gossypium hirsutum
(2)
Oryctolagus cuniculus
(2)
Ovis aries
(2)
Solanum lycopersicum
(2)
108887
(1)
1804623
(1)
Alkalicoccus halolimnae
(1)
Azumapecten farreri
(1)
Bacillus pumilus
(1)
Fusobacterium vincentii
(1)
Lycium barbarum
(1)
Methanosarcina barkeri MS
(1)
Mus
(1)
Mus sp.
(1)
Mycolicibacterium smegmatis MC2 51
(1)
Populus tomentosa
(1)
Suid alphaherpesvirus 1
(1)
Triticum aestivum/Septoria tritici mixed cDNA library
(1)
Organisms
Mus musculus
(6)
Homo sapiens
(5)
Rattus norvegicus
(2)
Escherichia coli str. K-12 substr. MG1655
(1)
Oreochromis niloticus
(1)
Sus scrofa
(1)
Arabidopsis thaliana
(1)
Repository
pride
(1624)
iProX
(186)
MassIVE
(101)
ENA
(29)
jPOST
(24)
geo
(13)
MetaboLights
(6)
EGA
(5)
PAXDB
(5)
GNPS
(2)
LINCS
(2)
biostudies-arrayexpress
(1)
GPMDB
(1)
NODE
(1)
Tissue
Cell culture
(358)
Brain
(126)
Epithelial cell
(123)
Liver
(78)
Lung
(52)
Permanent cell line cell
(52)
Blood plasma
(49)
Heart
(44)
Blood
(43)
Blood cell
(40)
Kidney
(39)
Fibroblast
(37)
Plant cell
(35)
T cell
(32)
Colon
(31)
Macrophage
(31)
B cell
(30)
Blood serum
(29)
Leaf
(28)
Cell suspension culture
(25)
Embryo
(22)
Root
(22)
Stem cell
(20)
Whole body
(20)
Hepatocyte
(19)
Bone marrow
(18)
Skin
(17)
Testis
(16)
Monocyte
(15)
Embryonic stem cell
(13)
Disease
Breast cancer
(46)
Colon cancer
(39)
Disease free
(39)
Acute leukemia
(22)
Cardiovascular system disease
(20)
Alzheimer's disease
(16)
Lung adenocarcinoma
(13)
Lung cancer
(13)
Malignant neoplasm of ovary
(13)
Lymphoma
(12)
Type 2 diabetes mellitus
(12)
COVID-19
(11)
Cervix carcinoma
(11)
Melanoma
(11)
Prostate adenocarcinoma
(10)
Parkinson's disease
(9)
Brain cancer
(8)
Non-small cell lung carcinoma
(7)
Wounds and Injuries
(7)
Human immunodeficiency virus infectious disease
(6)
Multiple myeloma
(6)
Severe acute respiratory syndrome
(6)
Brain glioblastoma multiforme
(5)
Chronic lymphocytic leukemia
(5)
Pancreatic cancer
(5)
Bacterial sepsis
(4)
Carcinoma
(4)
Colorectal cancer
(4)
Congenital disorder of glycosylation
(4)
Not Available
(1)
Technology Type
Mass Spectrometry
(1624)
Shotgun proteomics
(1063)
Bottom-up proteomics
(378)
Data-dependent acquisition
(248)
Affinity purification coupled with mass spectrometry proteomics
(72)
Top-down proteomics
(43)
Gel-based experiment
(15)
SRM/MRM
(15)
Data-independent acquisition
(14)
SWATH MS
(12)
Mass spectrometry
(6)
All-ion fragmentation
(6)
Chemical cross-linking coupled with mass spectrometry proteomics
(4)
Proteogenomics
(3)
Affinity proteomics
(2)
DiaPASEF
(2)
Mass spectrometry imaging
(2)
Glycoproteomics
(1)
Immunopeptidomics
(1)
MSE
(1)
Instrument Platform
Orbitrap Fusion Lumos
(25)
Orbitrap Fusion
(23)
Q Exactive
(15)
Orbitrap Eclipse
(12)
Q Exactive Plus
(7)
LTQ Orbitrap Elite
(6)
Q Exactive HF-X
(6)
Liquid Chromatography MS - positive - reverse phase
(4)
Liquid Chromatography MS - negative - reverse phase
(4)
LTQ Orbitrap Velos
(3)
Orbitrap Exploris 480
(2)
Q Exactive HF
(2)
Q-Exactive HF-X (Thermo Fisher)
(2)
Liquid Chromatography MS - alternating - hilic
(2)
Illumina HiSeq 2500
(1)
Instrument
(1)
NanoUPLC-MS/MS
(1)
Orbitrap Ascend
(1)
Orbitrap Astral
(1)
Orbitrap Astral Zoom
(1)
Orbitrap Fusion ETD
(1)
Orbitrap Fusion MS with Easy nLC-1200
(1)
Orbitrap Lumos
(1)
Q-Exactive
(1)
Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer
(1)
QExactive HFX
(1)
Thermo Fisher Oribitrap Elite Mass Spectrometer
(1)
Thermo Q-Exactive HF (QE) Quadrupole-Obitrap mass spectrometer
(1)
Liquid Chromatography MS - alternating - reverse phase
(1)
Publication Date
2023
(306)
2025
(288)
2022
(278)
2024
(248)
2026
(211)
2021
(211)
2020
(165)
2019
(96)
2018
(90)
2017
(29)
2016
(24)
2015
(9)
2014
(3)
2012
(2)
2013
(1)
UNIPROT ID/AC
1433A_SOYBN
(2)
1433B_SOYBN
(2)
1433C_SOYBN
(2)
1433D_SOYBN
(2)
2SS_SOYBN
(2)
3847.GLYMA0042S100.1
(2)
3847.GLYMA0070S50.1
(2)
3847.GLYMA01G05321.1
(2)
3847.GLYMA01G05765.1
(2)
3847.GLYMA01G09540.1
(2)
3847.GLYMA01G09640.1
(2)
3847.GLYMA01G14160.1
(2)
3847.GLYMA01G22140.1
(2)
3847.GLYMA01G23427.1
(2)
3847.GLYMA01G25116.1
(2)
3847.GLYMA01G27160.1
(2)
3847.GLYMA01G29440.1
(2)
3847.GLYMA01G33803.1
(2)
3847.GLYMA01G35730.1
(2)
3847.GLYMA01G35820.1
(2)
3847.GLYMA01G42950.2
(2)
3847.GLYMA02G01060.2
(2)
3847.GLYMA02G01170.1
(2)
3847.GLYMA02G04090.1
(2)
3847.GLYMA02G06710.1
(2)
3847.GLYMA02G07430.1
(2)
3847.GLYMA02G07740.1
(2)
3847.GLYMA02G11920.1
(2)
3847.GLYMA02G14495.1
(2)
3847.GLYMA02G14521.1
(2)
CHEBI ID
CHEBI:28300
(3)
CHEBI:46961
(2)
CHEBI:18237
(2)
CHEBI:27570
(2)
CHEBI:16811
(2)
CHEBI:16708
(2)
CHEBI:17750
(2)
CHEBI:18183
(2)
CHEBI:29016
(2)
CHEBI:16347
(2)
CHEBI:15354
(2)
CHEBI:15603
(2)
CHEBI:189567
(1)
CHEBI:189566
(1)
CHEBI:189565
(1)
CHEBI:189564
(1)
CHEBI:189571
(1)
CHEBI:189568
(1)
CHEBI:165589
(1)
CHEBI:165721
(1)
CHEBI:171952
(1)
CHEBI:186693
(1)
CHEBI:34719
(1)
CHEBI:3333
(1)
CHEBI:6348
(1)
CHEBI:176767
(1)
CHEBI:6649
(1)
CHEBI:176711
(1)
CHEBI:28205
(1)
CHEBI:172740
(1)
Metabolite Name
Betaine
(4)
Phytosphingosine
(3)
Choline
(3)
Adenine
(3)
Terpestacin
(2)
N,N-Dimethylaniline
(2)
Erucamide
(2)
Trigonelline
(2)
Lovastatin
(2)
Canthaxanthin
(2)
Styrene
(2)
Acetylcholine
(2)
Nicotinamide
(2)
Methionine
(2)
Glycocholic acid
(2)
Stearic acid
(2)
Oleamide
(2)
Adenosine
(2)
Cytosine
(2)
Zinniol
(2)
Testosterone
(2)
Oleic acid
(2)
Glutamine
(2)
Citrate
(2)
Azelaic acid
(2)
Methyl Jasmonate
(2)
Levetiracetam
(2)
L-Carnitine
(2)
Hypoxanthine
(2)
2-(6-hydroxy-6-methyloctyl)-2H-furan-5-one
(1)
First Public Date
2025
(6)
2023
(6)
2026
(5)
2024
(5)
2019
(5)
2021
(1)
2018
(1)
Classification
bacteria
(1)
Modification
Not available
(2)
2x(15)N labeled L-lysine
(1)
N6
(1)
N6-dimethyl-L-lysine
(1)
Study type
RNA-seq of coding RNA
(1)
Release Date
2022
(99)
2023
(91)
2021
(81)
2025
(64)
2024
(62)
2020
(56)
2019
(30)
2018
(23)
2015
(12)
2017
(11)
2026
(9)
2016
(8)
2014
(6)
2013
(2)
2012
(2)
2010
(1)
Lab affiliation
European Molecular Biology Laboratory
(18)
Umea University
(14)
USDA-ARS
(12)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK
(11)
Cellzome
(10)
Cambridge Institute for Medical Research, University of Cambridge
(7)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States
(7)
Cornell University
(6)
Moffitt Cancer Center Tampa, FL, USA
(6)
The University of Melbourne
(6)
Aarhus University, Denmark
(5)
Cellzome, a GSK company
(5)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain
(5)
The Institute of Cancer Research
(5)
Centre for Cancer Cell & Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
(4)
College of Life Sciences, South-Central University for Nationalities
(4)
Dept. Oncology Pathology, Karolinska Institutet, and Scilifelab, Stockholm, Sweden
(4)
Harvard Medical School
(4)
Institute of Cancer Research, London
(4)
Molecular Genetics, RPTU Kaiserslautern
(4)
Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences
(4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital
(4)
St. Jude Children's Research Hospital
(4)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University
(4)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China.
(4)
The Scripps Research Institute
(4)
Thoracic Oncology Moffitt Cancer Center Tampa, FL, USA
(4)
Vanderbilt University Proteomics Core
(4)
VetMedZg Laboratory,Faculty of Veterinary Medicine, University of Zagreb, Zagreb, Croatia Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow, UK
(4)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology
(4)
Tags
xref:PubMed:31201317
(4)
xref:PubMed:41077125
(2)
xref:PubMed:35181733
(1)
xref:PubMed:37252797
(1)
xref:PubMed:29807996
(1)
xref:PubMed:38590561
(1)
xref:PubMed:38942927
(1)
xref:PubMed:42207886
(1)
xref:PubMed:41827658
(1)
pathogen
(1)
pathogen:bacterium
(1)
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A benchmarking protocol for intact protein-level Tandem Mass Tag (TMT) labeling for quantitative top-down proteomics.
Not available
S-EPMC9587358
|
biostudies-literature
Cite
Optimization of protein-level tandem mass tag (TMT) labeling conditions in complex samples with top-down proteomics.
Not available
S-EPMC9371347
|
biostudies-literature
Cite
Identification of nine signature proteins involved in periodontitis by integrated analysis of TMT proteomics and transcriptomics.
Not available
S-EPMC9397367
|
biostudies-literature
Cite
Assessment of TMT Labeling Efficiency in Large-Scale Quantitative Proteomics: The Critical Effect of Sample pH.
Not available
S-EPMC8154127
|
biostudies-literature
Cite
Development of an Adaptive, Economical, and Easy-to-Use SP3-TMT Automated Sample Preparation Workflow for Quantitative Proteomics.
Not available
S-EPMC11888279
|
biostudies-literature
Cite
Development of an Adaptive, Economical, and Easy-to-Use SP3-TMT Automated Sample Preparation Workflow for Quantitative Proteomics.
Not available
S-EPMC12150330
|
biostudies-literature
Cite
TMT-labeling Proteomics of Papillary Thyroid Carcinoma Reveal Invasive Biomarkers.
Not available
S-EPMC7477402
|
biostudies-literature
Cite
TMT proteomics analysis of a pseudocereal crop, quinoa (
Chenopodium quinoa
Willd.), during seed maturation.
Not available
S-EPMC9678934
|
biostudies-literature
Cite
TMT-based Multiplexed (Chemo)proteomics on the Orbitrap Astral Mass Spectrometer
This dataset contains an evaluation of TMT-based multiplexed proteomics on the Orbitrap Astral mass spectrometer.
ORGANISM(S):
Homo Sapiens (ncbitaxon:9606)
2024-12-17
|
MSV000096674
|
MassIVE
Cite
TMT-Based Quantitative Proteomics Analysis of Synovial Fluid-Derived Exosomes in Inflammatory Arthritis.
Not available
S-EPMC8961740
|
biostudies-literature
Cite
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