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Transcriptomics (2900)
Proteomics (1769)
Unknown (265)
Genomics (186)
Metabolomics (72)
Other (1)

Organisms

Homo sapiens (785)
Mus musculus (515)
Drosophila melanogaster (510)
Saccharomyces cerevisiae (125)
Arabidopsis thaliana (91)
Rattus norvegicus (71)
Salmo salar (31)
Escherichia coli (31)
Rhizobium leguminosarum (30)
Caenorhabditis elegans (26)
Sus scrofa (24)
Danio rerio (24)
Candida albicans (21)
Bos taurus (20)
Schizosaccharomyces pombe (17)
Gallus gallus (17)
Bordetella bronchiseptica (16)
Oryza sativa (16)
Burkholderia cenocepacia (16)
Methanococcus maripaludis S2 (15)
Mycobacterium tuberculosis (14)
Solanum tuberosum (14)
Apis mellifera (13)
Streptococcus pneumoniae (13)
Pimephales promelas (11)
Sinorhizobium meliloti (11)
Solanum lycopersicum (10)
Corynebacterium glutamicum (9)
Clostridium acetobutylicum (9)
Zea mays (9)

Organisms

Mus musculus (20)
Homo sapiens (18)
Saccharomyces cerevisiae (8)
Rattus norvegicus (6)
Danio rerio (4)
Plasmodium berghei ANKA (2)
Plasmodium berghei (2)
Spirosoma montaniterrae (1)
Geobacillus sp. E263 (1)
Streptococcus pneumoniae D39 (1)
Bifidobacterium animalis subsp. animalis (1)
Cardamine hirsuta (1)
Schistosoma mansoni (1)
Lactuca sativa (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Candida albicans (1)
food metagenome (1)
Escherichia coli K-12 (1)
Zea mays (1)
Arabidopsis thaliana (1)
food fermentation metagenome (1)
Plasmodium falciparum (1)
Bos taurus (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (3016)
pride (1733)
ENA (85)
MetaboLights (72)
geo (14)
jPOST (14)
iProX (5)
MassIVE (5)
NODE (3)

Tissue

Cell culture (372)
Epithelial cell (136)
Brain (92)
Permanent cell line cell (55)
Liver (45)
Plant cell (43)
Whole body (40)
Blood plasma (39)
Fibroblast (39)
Leaf (39)
Skin (33)
Cell suspension culture (32)
Blood serum (30)
Kidney (29)
B cell (28)
Blood (28)
Colon (28)
Heart (28)
Lung (28)
Macrophage (27)
Blood cell (23)
HeLa cell (21)
Hepatocyte (21)
Root (21)
Stem cell (21)
Embryonic stem cell (19)
T cell (16)
Embryo (15)
Blood platelet (12)
Skeletal muscle (1)

Disease

Normal (42)
Breast cancer (36)
Neuroblastoma (12)
Glioblastoma (10)
Chronic lymphocytic leukemia (4)
Prostate cancer (4)
Acute myeloid leukemia (4)
Adenocarcinoma (3)
ACUTE MYELOID LEUKEMIA (2)
Squamous Cell Carcinoma (2)
Primary tumor (2)
Rheumatoid arthritis (2)
Colon adenocarcinoma (2)
Acute Myeloid Leukemia (2)
Cancer (2)
Reference (2)
Mammary tumor (2)
Central nervous system cancer (2)
Perineural invasion (1)
Breast Normal (1)
Intestinal type gastric cancer (1)
Hepatomegaly (1)
Perilobar nephrogenic rest (1)
CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
Nonfunctioning endocrine tumors (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
Multibacillary (1)
B-cell chronic lymphocytic leukemia (1)
Uninfected (1)

Technology Type

Mass Spectrometry (1733)
Shotgun proteomics (926)
Bottom-up proteomics (329)
Affinity purification coupled with mass spectrometry proteomics (230)
Data-dependent acquisition (169)
Gel-based experiment (132)
Data-independent acquisition (105)
SWATH MS (71)
Mass spectrometry (57)
Chemical cross-linking coupled with mass spectrometry proteomics (44)
Top-down proteomics (44)
SRM/MRM (31)
Affinity proteomics (16)
Mass spectrometry assay (12)
All-ion fragmentation (12)
HDMSE (10)
MSE (8)
Mass spectrometry imaging (7)
Proteogenomics (5)
NMR spectroscopy (4)
DiaPASEF (4)
Glycoproteomics (4)
Immunopeptidomics (4)
Metaproteomics (3)
SomaScan affinity proteomics (3)
NMR spectroscopy assay (1)
PAcIFIC (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Scanning hardware (28)
Illumina NovaSeq 6000 (27)
NextSeq 500 (24)
Illumina HiSeq 2000 (21)
GenePix 4000B [Axon Instruments] (14)
Illumina HiSeq 2500 (13)
Axon- GenePix4000B (10)
Illumina HiSeq 4000 (10)
G2565AA DNA microarray scanner [Agilent] (8)
ScanArray 4000XL [PerkinElmer] (7)
Illumina MiSeq (7)
NextSeq 550 (7)
Agilent Technologies G2565CA microarray scanner (6)
Axon GenePix 4000B scanning hardware (6)
NextSeq 2000 (6)
Illumina HiSeq 3000 (6)
Vortex (5)
Illumina HiSeq 1500 (5)
GenePix Personal 4100A [Axon Instruments] (4)
GenePix 4000A [Axon Instruments] (4)
Illumina Genome Analyzer IIx (4)
G2565BA DNA microarray scanner [Agilent] (4)
ScanArray Express HT [PerkinElmer] (4)
Axon Instruments GenePix 4000B scanner (3)
GenePix Professional 4200A [Axon Instruments] (3)
418 [Affymetrix] (3)
Illumina Genome Analyzer II (3)
Illumina NovaSeq X (3)
Axon GenePix 4000B scanner (2)
Complete Genomics (2)

Publication Date

2010 (482)
2011 (460)
2013 (458)
2025 (314)
2012 (257)
2024 (243)
2023 (243)
2022 (233)
2014 (232)
2015 (231)
2021 (213)
2026 (181)
2016 (170)
2020 (168)
2009 (168)
2008 (160)
2018 (143)
2019 (117)
2007 (107)
2017 (105)
2005 (85)
2006 (58)
2004 (19)
2003 (8)
2002 (1)

CHEBI ID

CHEBI:16335 (16)
CHEBI:16919 (16)
CHEBI:30769 (16)
CHEBI:15741 (15)
CHEBI:28044 (15)
CHEBI:18186 (14)
CHEBI:17368 (14)
CHEBI:17822 (13)
CHEBI:27266 (13)
CHEBI:18237 (12)
CHEBI:22660 (12)
CHEBI:16811 (12)
CHEBI:16708 (12)
CHEBI:15891 (12)
CHEBI:26271 (11)
CHEBI:16856 (11)
CHEBI:28300 (11)
CHEBI:24898 (11)
CHEBI:25017 (11)
CHEBI:15428 (11)
CHEBI:6650 (11)
CHEBI:17750 (11)
CHEBI:27897 (11)
CHEBI:25094 (10)
CHEBI:22653 (10)
CHEBI:27570 (10)
CHEBI:26986 (10)
CHEBI:16610 (10)
CHEBI:18211 (10)
CHEBI:18012 (10)

Metabolite Name

Creatine (13)
Serine (11)
Adenosine (11)
Hypoxanthine (11)
Succinic acid (10)
Methionine (9)
Proline (9)
Phenylalanine (9)
Creatinine (9)
Glutathione (8)
Ornithine (8)
Citric acid (8)
Malic acid (8)
Tyrosine (8)
Isoleucine (8)
Adenine (8)
Cytidine (8)
Histidine (7)
Leucine (7)
AMP (7)
Trigonelline (7)
Uracil (7)
Betaine (7)
Citrulline (7)
Taurine (7)
Lysine (7)
Threonine (7)
Tryptophan (7)
Glucose (6)
Thymine (6)

First Public Date

2014 (21)
2025 (19)
2024 (10)
2022 (7)
2026 (6)
2023 (5)
2021 (3)
2020 (3)
2019 (3)
2018 (2)
2016 (2)
2013 (2)
2017 (1)
2015 (1)

Classification

protozoa (5)
bacteria (3)
helminths (1)
fungi (1)

Modification

4x(15)N labeled L-arginine (5)
2x(15)N labeled L-lysine (4)
N6 (4)
N6-dimethyl-L-lysine (4)
-17.026549 (2)
15.994915 (2)
42.010565 (2)
Not available (2)
+3amu) (1)
-18.010565 (1)
15.99491 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4-dinitrophenyl modified residue (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.02146 (1)
57.021464 (1)
79.966331 (1)
Heavy form - site K (1)
Light form - site K (1)

Study type

Transcription profiling by array (1934)
ChIP-chip by tiling array (446)
Comparative genomic hybridization by array (91)
ChIP-seq (81)
RNA-seq of coding RNA (78)
ChIP-chip by array (73)
MicroRNA profiling by array (48)
Methylation profiling by array (29)
Unknown experiment type (28)
Other (28)
Transcription profiling by tiling array (25)
RNA-seq of coding RNA from single cells (22)
DNA-seq (12)
Proteomic profiling by array (12)
RNA-seq of non coding RNA (10)
Cell line - High-throughput sequencing (7)
Methylation profiling by high throughput sequencing (7)
RIP-seq (6)
High-throughput sequencing (4)
Animal - High-throughput sequencing (4)
Genotyping by array (4)
ATAC-seq (4)
Hi-C (4)
RNA-seq of total RNA (4)
MNase-seq (3)
Human - Two-color microarray (3)
RNAi profiling by array (3)
Capture-C (3)
Animal - Two-color microarray (2)
Animal - One-color microarray (2)

Release Date

2010 (483)
2013 (464)
2011 (463)
2012 (259)
2014 (220)
2015 (207)
2009 (168)
2008 (164)
2016 (111)
2007 (108)
2005 (85)
2022 (68)
2021 (64)
2006 (58)
2020 (54)
2023 (50)
2017 (46)
2018 (44)
2025 (43)
2019 (43)
2024 (39)
2026 (18)
2004 (14)
2003 (7)
2002 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (51)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (20)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (20)
North Carolina State University (12)
University of Bristol (10)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (8)
IRCCS Istituto G Gaslini (7)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (5)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (4)
Biognosys AG (4)
CECAD, University of Cologne (4)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (4)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Institute of microbiology, University of Greifswald (4)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (4)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (3)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (3)
Center for Neuroscience and Cell Biology (3)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (3)
Chair of Proteomics and Bioanalytics, Technische Universitaet Muenchen (3)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (3)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (3)
Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin Luther University Halle-Wittenberg Halle (Saale), Germany (3)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (3)
Department of Synthetic Chemistry & Biological Chemistry, Graduate School of Engineering, Kyoto Univ. Katsura, Kyoto 615-8510, JAPAN (3)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (3)
Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruder Boskovic Institute, Zagreb, Croatia (3)

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