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ProteomicsIntegrin a5, aV, and aVb3 in zebrafish embryos at the 12 somite stage
Integrins are a major class of heterodimeric adhesion receptors composed of an a and b subunit that mediate cell adhesion to the extracellular matrix (ECM). The extracellular matrix protein fibronectin is important for early vertebrate development, and Integrin a5b1 and aVb3 are the two primary fibr...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2021-09-10 | PXD024665 | Pride
Lc-msms Integrin 12 somite stage Zebrafish Extracellular matrix 
TranscriptomicsTranscription profiling of Theiler stage 17 wild type mouse anterior vs posterior mouse sclerotome
This experiment was performed in order to identify transcriptional differences between the anterior- and posterior-halves of mouse sclerotome. Cells-derived from the anterior- and posterior-sclerotome-halves from maturing mouse somites were compared to identify transcripts that are differentially ex...
ORGANISM(S): Mus musculus 
2006-11-16 | E-MEXP-913 | biostudies-arrayexpress
TranscriptomicsRNA-seq of mouse individual epithelial somites through development
Somites are transient embryonic structures consisting of hundreds of cells that bud off from the anterior tip of the presomitic mesoderm on each side of the neural tube. They give rise to the vertebrae and associated skeletal muscles, nerves, and blood vessels. To characterise the transcriptional ch...
ORGANISM(S): Mus musculus 
2023-03-31 | E-MTAB-12511 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of the paraxial mesoderm of zebrafish embryos - spatiotemporal analysis
Differentially expressed genes along the paraxial mesoderm of 12 somite stage zebrafish embryos are identified Tissue samples from 6 different spatial positions were dissected from wild-type (AB) embryos, RNA is amplified and hybridized to arrays
ORGANISM(S): Danio rerio 
2010-02-22 | E-GEOD-15796 | biostudies-arrayexpress
TranscriptomicsATAC-seq of mouse individual epithelial somites through development
Somites are transient embryonic structures consisting of hundreds of cells that bud off from the anterior tip of the presomitic mesoderm (PSM) on each side of the neural tube. They give rise to the vertebrae and associated skeletal muscles, nerves, and blood vessels. To characterise the transcriptio...
ORGANISM(S): Mus musculus 
2023-01-24 | E-MTAB-12539 | biostudies-arrayexpress
TranscriptomicsIdentification of endoderm-specific genes in mouse embryos
The foregut definitive endoderm is the precursor of many tissues including the liver, pancreas, thyroid, lungs, trachea and oesophagus. However, networks and pathways involved in the early development of the definitive endoderm of mammals are not well studied. To identify genes with potential roles ...
ORGANISM(S): Mus musculus 
2012-03-13 | E-GEOD-36453 | biostudies-arrayexpress
TranscriptomicsExpression analysis of zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos
Investigation of whole genome gene expression level changes in zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos, compared to the wild-type ebryos. A twelve-chip study using total RNA isolated from gata1-GFP positive cells (sorted by FACS) from 12 somite-stage wild type embryos...
ORGANISM(S): Danio rerio 
2010-07-13 | E-GEOD-20432 | biostudies-arrayexpress
TranscriptomicsIntegrated cell-to-cell signaling networks regulate vertebrate axis formation and left-right asymmetry
Target genes of four signaling pathways (Notch, Fgf, Retinoic Acid [RA] and Wnt) are identified in the posterior presomitic mesoderm of 12 somite stage zebrafish embryos. Tissue samples from were dissected from wild-type (AB), transgenic or drug treated embryos, RNA is amplified and hybridized to ar...
ORGANISM(S): Danio rerio 
2011-02-01 | E-GEOD-17949 | biostudies-arrayexpress
GenomicsDrop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints)
Drop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints)
PRJNA417290 | ENA
TranscriptomicsBulk RNA-sequencing on Oryzias latipes WT samples and mespb KO tails 13-14 somite stage
Bulk-RNA sequencing was performed on WT Cab and mespb KO unsegmented tails at the 13-14 SS  (3 replicates each)
ORGANISM(S): Oryzias latipes 
2024-03-14 | E-MTAB-13928 | biostudies-arrayexpress
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