40s - OmicsDI

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Unknown (997)
Transcriptomics (709)
Proteomics (489)
Genomics (198)
Other (49)
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Methylation profiling (1)

Organisms

Homo sapiens (346)
Mus musculus (188)
Saccharomyces cerevisiae (73)
Arabidopsis thaliana (56)
Drosophila melanogaster (31)
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Staphylococcus aureus (15)
Caenorhabditis elegans (11)
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Schizosaccharomyces pombe (6)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (5)
Mycobacterium tuberculosis (5)
Escherichia coli str. K-12 substr. MG1655 (5)
Escherichia coli (5)
Solea senegalensis (4)
Streptomyces coelicolor A3(2) (4)
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Oryza sativa Japonica Group (3)
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Platichthys flesus (2)
Enterococcus faecalis OG1RF (2)
Plasmodium berghei (2)
Yersinia pestis (2)
Oryza sativa Indica Group (2)
Helicobacter pylori (2)

Organisms

Homo sapiens (46)
Saccharomyces cerevisiae (31)
Mus musculus (16)
Drosophila melanogaster (6)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae BY4741 (3)
Saccharomyces cerevisiae S288C (1)
Locusta migratoria (1)
Schizosaccharomyces pombe (1)
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Toxoplasma gondii (1)

Repository

biostudies-arrayexpress (697)
pride (206)
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Disease

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Mock infection (1)
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Psoriasis vulgaris (1)
T. circumcincta infection (1)
B-cell chronic lymphocytic leukemia (1)
Parkinson's disease (1)
Spinocerebellar ataxia type 1 (1)
Temporal lobe epilepsy (1)
Ewing's sarcoma (1)
Inflammatory and toxic neuropathy (1)
Hepatic steatosis (1)
Pulmonary sarcoidosis (1)
Dengue disease (1)
Phenotype (1)
Esophageal carcinoma (1)
Insulin insensitivity (1)

Technology Type

Mass Spectrometry (206)
Shotgun proteomics (100)
Bottom-up proteomics (47)
Affinity purification coupled with mass spectrometry proteomics (44)
Data-dependent acquisition (24)
Data-independent acquisition (23)
Gel-based experiment (14)
Mass spectrometry (10)
Mass spectrometry assay (9)
Top-down proteomics (8)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
SWATH MS (4)
SRM/MRM (3)
NMR spectroscopy (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Glycoproteomics (1)
RNA mass spectrometry (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
Illumina HiSeq 2000 (15)
NextSeq 500 (15)
Illumina HiSeq 2500 (12)
Illumina HiSeq 4000 (8)
NextSeq 550 (4)
Scanning hardware (3)
None (3)
NextSeq 2000 (3)
Illumina MiSeq (3)
Ribo-Zero Gold (Illumina) (2)
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Axon- GenePix4000B (2)
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HiSeq X Ten (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 3000 (2)
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Described in protocol (1)
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Non (1)
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10X Genomics Chromium (1)
Beadarray reader (1)
Agilent High resolution C scanner (1)
Maxwell 16 Instrument (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Ultracentrifuge (1)

Publication Date

2024 (90)
2010 (87)
2025 (82)
2020 (82)
2013 (78)
2014 (77)
2012 (72)
2021 (70)
2023 (67)
2015 (64)
2026 (62)
2011 (61)
2018 (58)
2008 (57)
2019 (54)
2022 (53)
2016 (52)
2017 (41)
2009 (38)
2007 (26)
2005 (12)
2006 (6)
2004 (1)
2003 (1)

UNIPROT ID/AC

P12385 (1)
P05453 (1)
P32471 (1)
P29547 (1)
P36008 (1)
P39730 (1)
P06634 (1)
P34167 (1)
P10081 (1)
P04147 (1)
P39935 (1)
P39936 (1)
P07260 (1)
P38912 (1)
P32911 (1)
P38431 (1)
P06103 (1)
P38249 (1)
Q04067 (1)
P40217 (1)
P32497 (1)
P09032 (1)
P32501 (1)
P12754 (1)
P32502 (1)
P14741 (1)
P09064 (1)
P32481 (1)
P16521 (1)
P20459 (1)

CHEBI ID

CHEBI:16750 (4)
CHEBI:15741 (4)
CHEBI:15882 (4)
CHEBI:16704 (4)
CHEBI:17596 (4)
CHEBI:18344 (4)
CHEBI:17368 (4)
CHEBI:17973 (3)
CHEBI:27781 (3)
CHEBI:28792 (3)
CHEBI:28997 (3)
CHEBI:17768 (3)
CHEBI:18335 (3)
CHEBI:18095 (3)
CHEBI:17992 (3)
CHEBI:16552 (3)
CHEBI:17025 (3)
CHEBI:48430 (3)
CHEBI:64032 (3)
CHEBI:17256 (3)
CHEBI:16680 (3)
CHEBI:16927 (3)
CHEBI:16695 (3)
CHEBI:17802 (3)
CHEBI:2651 (1)
CHEBI:17843 (1)
CHEBI:29173 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:33699 (1)

Metabolite Name

Penciclovir (5)
L-Lysine (5)
Taurine (5)
Creatine (5)
Thiamine pyrophosphate (4)
Jervine (4)
Isovalerylglutamic acid (4)
N-Propionylmethionine (4)
1-Octen-3-yl glucoside (4)
Heptadecanoic acid (4)
Butalbital (4)
Lumichrome (4)
Kynurenic acid (4)
L-Arginine (4)
L-Asparagine (4)
Acetylcarnitine (4)
L-Histidine (4)
Indole (4)
N-Acetylneuraminic acid (4)
Phenylacetylglycine (4)
Cholic acid (4)
N-Undecylbenzenesulfonic acid (4)
Adenosine (4)
N-Acetylserotonin (4)
Riboflavin (4)
Linoleic acid (4)
L-Glutamine (4)
Dihydroxyacetone phosphate (4)
Erythritol (4)
Uric acid (4)

First Public Date

2024 (19)
2026 (18)
2023 (17)
2019 (17)
2020 (16)
2021 (15)
2025 (14)
2018 (6)
2022 (5)
2014 (5)
2017 (3)
2016 (3)
2015 (3)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

UCSD (15)
MDC (5)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
IBCII, Goethe University Frankfurt, Germany, Medical School (3)
University of Surrey (3)
Department of Biochemistry, Biomedical Sciences Building, University of Bristol, Bristol, United Kingdom (3)
National Heart and Lung Institute, Imperial College London, London, UK (3)
Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Centre for Proteomic Research, B85, Life Sciences Building, University of Southampton, University Road Highfield, Southampton, Hants. SO17 1BJ United Kingdom (2)
Aarhus University Department of Biomedicine DK-8000 Aarhus C (2)
Whitehead Institute and MIT (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Division of Cancer Epigenomics, German Cancer Research Center (DKFZ), INF280, 69120 Heidelberg, Germany (2)
Department of Gene Expression Institute of Molecular Biology and Biotechnology Faculty of Biology Adam Mickiewicz University Uniwersytetu Poznanskiego 6 61-614 Poznan (2)
Department of Biology, Institute of Biochemistry, ETH Zurich, Switzerland (2)
Department of Biochemistry and Biomedical Sciences McMaster University (2)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Head of the Curie Institute Mass Spectrometry Platform (2)
Laboratory of Transcriptional Networks, Department of Cellular, Computational, and Integrative Biology, CIBIO, University of Trento, via Sommarive 9, 38123 Trento, Italy (1)
Beijing Ditan Hospital, Capital Medical University (1)
ABCT, The Hong Kong Polytechnic University (1)
Georg-August-University Goettingen, Albrecht-von-Haller-Institute of Plant Sciences, Department of Plant Molecular Biology and Physiology (1)
University Heidelberg, Centre for molecular biology, mass spectrometry and proteomics core facility (1)
Centre for Heamato-Oncology / Barts Cancer Institute (1)
RNA Group, Department of Biochemistry, Université de Sherbrooke, Sherbrooke, Qc, Canada (1)
Ulm University Hospital and German Center for Neurodegenerative Diseases (DZNE) Ulm, Germany (1)
Karolinska Institute Division of Molecular Metabolism Department of Medical Biochemistry and Biophysics (1)
CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R & A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China. (1)
University of Zurich, Institute for Medical Virology, Switzerland (1)

IsPrivate

False (1)

Classification

protozoa (1)

Modification

2x(15)N labeled L-lysine (1)

Study type

Transcription profiling by array (431)
RNA-seq of coding RNA (92)
ChIP-seq (39)
Unknown experiment type (20)
Comparative genomic hybridization by array (17)
ChIP-chip by tiling array (12)
RNA-seq of coding RNA from single cells (10)
High-throughput sequencing (8)
ChIP-chip by array (8)
Other (7)
Transcription profiling by RT-PCR (5)
Methylation profiling by array (5)
RNAi profiling by array (4)
RNA-seq of total RNA (4)
Transcription profiling by SAGE (3)
Proteomic profiling by array (3)
RNA-seq of non coding RNA (3)
CLIP-Seq (2)
Cell line - One-color microarray (2)
Animal - High-throughput sequencing (2)
RIP-seq (2)
Single nucleus RNA sequencing (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Methylation profiling by high throughput sequencing (2)
PRO-seq (1)
RIP-chip by array (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)

Release Date

2014 (130)
2013 (110)
2010 (106)
2012 (98)
2016 (96)
2011 (95)
2015 (94)
2025 (90)
2022 (90)
2023 (89)
2021 (83)
2020 (83)
2024 (77)
2008 (72)
2018 (65)
2019 (63)
2017 (61)
2009 (52)
2007 (41)
2026 (25)
2005 (24)
2006 (12)
2004 (9)
2003 (9)
2001 (5)
2000 (5)
1999 (4)
2002 (3)
1998 (2)
1997 (1)

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Metabolomic Profiling of Non-target Metabolites in Streptomyces sp. LZZY-S40

This study aimed to characterize the non-targeted metabolite profile of Streptomyces sp. LZZY-S40 to explore its potential for producing bioactive secondary metabolites. The strain LZZY-S40 was cultivated on ISP 3 agar plates at 28°C for 7 days. Spores were harvested and inoculated into 250 mL Erlen...

2026-03-29 | MTBLS14181 | MetaboLights

Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

Ribosome assembly in eukaryotes involves the activity of hundreds of assembly factors that direct the hierarchical assembly of ribosomal proteins and numerous ribosomal RNA folding steps. However, detailed insights into the function of assembly factors and ribosomal RNA folding events are lacking. T...

ORGANISM(S): Saccharomyces cerevisiae

2014-11-14 | E-GEOD-52878 | biostudies-arrayexpress

Proteomics analysis of human pre-40S ribosomal particles

Proteomics analysis of late human pre-40S particles purified using a catalytically-inactive RIO1 as bait. Analysis of RIO1(kd)-StHA pre-40S particles composition upon RPS26 depletion with siRNA.

ORGANISM(S): Homo sapiens (Human)

2021-05-12 | PXD019270 | Pride

Ribosomal particles

Proteomics analysis of Tsr1-purified yeast pre-40S particles

Proteomics analysis of pre-40S ribosomal particles.

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2020-03-09 | PXD016577 | Pride

Tsr1 Ribosome Pre-40s particles

40S footprints of Eif6 WT and Eif6 S235A MEFs

Analysis of 40S ribosome profiling of Eif6 WT and Eif6 S235A MEFs

ORGANISM(S): Mus musculus

2026-02-10 | E-MTAB-14860 | biostudies-arrayexpress

40S ribosome profiling reveals distinct roles for Tma20/Tma22 (MCT-1/DENR) and Tma64 (eIF2D) in 40S subunit recycling

PRJNA608705 | ENA

40S hnRNP particles are a novel class of nuclear biomolecular condensates

Heterogenous nuclear ribonucleoproteins (hnRNPs) are abundant proteins implicated in various steps of RNA processing that assemble on nuclear RNA into larger complexes termed 40S hnRNP particles. Despite their initial discovery 55 years ago, our understanding of these intriguing macromolecular assem...

ORGANISM(S): Homo sapiens (Human)

2022-05-30 | PXD031677 | Pride

Hnrnp Ribonucleosome 40s particles

40S footprints of Eif6 WT and Eif6 S235A MEFs

PRJEB86007 | ENA

Saccharomyces cerevisiae

Hetero-40S, Homo-40S, E-hetero-40S, E-homo-40S mRNA sequencing Raw data

PRJNA773207 | ENA

eIF2D promotes 40S ribosomal subunit recycling during intrinsic ribosome destabilization

PRJNA1219200 | ENA

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2467 Results

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