5600 - OmicsDI

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Proteomics (1315)
Unknown (1227)
Metabolomics (122)
Transcriptomics (18)
Genomics (17)
Multiomics (17)
Other (6)
Models (4)
Genomic (1)
Methylation profiling (1)

Organisms

Allexis (988)
Arabidopsis thaliana (988)
Entamoeba histolytica HM-1:IMSS-A (988)
Escherichia coli (988)
Homo sapiens (73)
Mus musculus (11)
Oryctolagus cuniculus (2)
Aeromonas veronii (2)
Gallus gallus (2)
Drosophila sechellia x Drosophila simulans (1)
Acropora millepora (1)
Drosophila mauritiana (1)
Drosophila sechellia (1)
Drosophila simulans (1)
Viridiplantae (1)
Achromobacter insuavis (1)
Enterobacter cancerogenus (1)
Rattus rattus (1)
Paraprevotella clara (1)
cellular organisms (1)
Basidiobolus meristosporus (1)
Chironex fleckeri (1)
Chrysaora fuscescens (1)
Escherichia coli (1)
Homo (1)
Nakaseomyces glabratus (1)
Pseudomonas chlororaphis (1)
Streptococcus thermophilus ASCC 1275 (1)
unidentified (1)
Saccharomyces cerevisiae (1)

Organisms

uncultured prokaryote (3)
Homo sapiens (3)
Delphinium exaltatum (1)
Acinetobacter sp. ANC 5600 (1)
Tolivirales (1)
Geminiviridae (1)
Rhizobium sp. NCIM 5600 (1)
Acropora millepora (1)
Mus musculus (1)

Repository

pride (988)
MassIVE (240)
PeptideAtlas (76)
MetaboLights (75)
GNPS (42)
biostudies-arrayexpress (16)
ENA (15)
iProX (10)
geo (5)
BioModels (4)
jPOST (4)
NODE (4)
ExpressionAtlas (1)
dbGaP (1)
GPMDB (1)
MetabolomicsWorkbench (1)
PanoramaPublic (1)

Tissue

Cell culture (166)
Brain (73)
Liver (46)
Plant cell (44)
Epithelial cell (39)
Others (32)
Cell suspension culture (31)
Blood plasma (28)
Blood serum (28)
Leaf (28)
Blood cell (21)
Heart (19)
Hepatocyte (18)
Permanent cell line cell (18)
Whole body (18)
Kidney (16)
Root (16)
Blood (15)
Lung (15)
B cell (13)
Plasma Non-glyco (12)
Macrophage (12)
Stem cell (12)
Colon (11)
Skin (11)
Breast (4)
Kidney (2)
Lung (2)
Cyst fluid (1)
Digestive System (1)

Disease

Disease free (32)
Breast cancer (24)
Colon cancer (11)
Malignant neoplasm of ovary (11)
Acute leukemia (10)
Alzheimer's disease (10)
Prostate adenocarcinoma (10)
Wounds and Injuries (7)
Cardiovascular system disease (6)
Infertility (6)
Lung cancer (6)
Cervix carcinoma (5)
Lymphoma (5)
Melanoma (5)
Chronic myeloid leukemia (4)
Hepatocellular carcinoma (4)
Metabolic dysfunction-associated steatotic liver disease (4)
Pancreas adenocarcinoma (4)
Parkinson's disease (4)
Atopic dermatitis (3)
Brain cancer (3)
Chronic lymphocytic leukemia (3)
Pancreatic cancer (3)
Pancreatic ductal adenocarcinoma (3)
Tuberculosis (3)
COVID-19 (2)
Uninfected (1)
Not Available (1)
Cancer (1)
Non-small Cell Lung Carcinoma (1)

Technology Type

Mass Spectrometry (989)
Shotgun proteomics (533)
SWATH MS (314)
Gel-based experiment (88)
Affinity purification coupled with mass spectrometry proteomics (63)
Bottom-up proteomics (58)
Mass spectrometry (55)
Top-down proteomics (32)
Mass spectrometry assay (20)
Data-dependent acquisition (20)
Data-independent acquisition (16)
Chemical cross-linking coupled with mass spectrometry proteomics (15)
SRM/MRM (14)
All-ion fragmentation (7)
Mass spectrometry imaging (6)
Immunopeptidomics (4)
MSE (3)
NMR spectroscopy (2)
Affinity proteomics (2)
ESI (1)
HDMSE (1)
Metaproteomics (1)

Instrument Platform

TripleTOF 5600 (308)
TripleTOF 5600+ (25)
Orbitrap Fusion (14)
TripleTOF 6600 (12)
LTQ Orbitrap Velos (10)
Orbitrap Fusion Lumos (9)
LTQ Orbitrap Elite (8)
TripleTOF 5600+|1002584 (6)
LTQ Orbitrap (6)
Q Exactive (6)
Q Exactive HF (6)
LTQ (5)
LTQ Orbitrap XL (5)
TripleTOF 5600 (AB Sciex) (4)
Q Exactive Plus (4)
Impact (3)
MS:1000031 (3)
Q Exactive HF-X (3)
TimsTOF Pro (3)
Illumina NovaSeq 6000 (2)
ABSciex TripleTOF 5600 (2)
AB SCIEX Triple TOF 5600 (2)
MaXis 4G (2)
Orbitrap Exploris 480 (2)
Synapt G2-S HDMS (2)
Illumina NovaSeq X (1)
ACQUITY UPLC H-Class (1)
Orbitrap Exactive Pluse (1)
TripleTOF 5600-1 (1)
Instrument (1)

Publication Date

2022 (170)
2020 (143)
2018 (142)
2021 (132)
2019 (129)
2023 (102)
2017 (101)
2024 (95)
2025 (92)
2015 (85)
2016 (78)
2014 (69)
2026 (58)
2013 (19)
2007 (6)
2008 (4)
2005 (2)
2010 (2)
2009 (1)
2006 (1)
2003 (1)

UNIPROT ID/AC

P63261 (50)
P68032 (50)
P60709 (50)
Q969D9 (1)
P13501 (1)
P42768 (1)
Q13480 (1)
P22692 (1)
P53779 (1)
P17936 (1)
Q8WU20 (1)
P10398 (1)
Q9BXX0 (1)
Q9NXG6 (1)
P11487 (1)
P13725 (1)
P08620 (1)
P15036 (1)
Q15746 (1)
P15514 (1)
P21781 (1)
P04004 (1)
Q9Y5S2 (1)
Q5VT25 (1)
P01583 (1)
O75116 (1)
P42830 (1)
P12644 (1)
P14921 (1)
P18146 (1)

ENSEMBL ID

ENSG00000170477 (40)
ENSG00000147251 (14)
ENSRNOG00000000048 (11)
ENSRNOG00000000122 (11)
ENSRNOG00000000158 (11)
ENSRNOG00000000165 (11)
ENSRNOG00000000185 (11)
ENSRNOG00000000186 (11)
ENSRNOG00000000195 (11)
ENSRNOG00000000201 (11)
ENSRNOG00000000325 (11)
ENSRNOG00000000381 (11)
ENSRNOG00000000386 (11)
ENSRNOG00000000419 (11)
ENSRNOG00000000456 (11)
ENSRNOG00000000519 (11)
ENSRNOG00000000541 (11)
ENSRNOG00000000558 (11)
ENSRNOG00000000566 (11)
ENSRNOG00000000604 (11)
ENSRNOG00000000613 (11)
ENSRNOG00000000694 (11)
ENSRNOG00000000697 (11)
ENSRNOG00000000800 (11)
ENSRNOG00000000814 (11)
ENSRNOG00000000826 (11)
ENSRNOG00000000841 (11)
ENSRNOG00000000851 (11)
ENSRNOG00000000852 (11)
ENSRNOG00000000866 (11)

CHEBI ID

CHEBI:16704 (15)
CHEBI:17509 (15)
CHEBI:15971 (15)
CHEBI:16015 (15)
CHEBI:16750 (15)
CHEBI:7916 (14)
CHEBI:17895 (14)
CHEBI:17596 (14)
CHEBI:16828 (14)
CHEBI:17368 (14)
CHEBI:30769 (14)
CHEBI:16919 (13)
CHEBI:17191 (13)
CHEBI:17568 (12)
CHEBI:17203 (12)
CHEBI:16467 (12)
CHEBI:17154 (12)
CHEBI:15756 (12)
CHEBI:17687 (12)
CHEBI:17012 (11)
CHEBI:28834 (11)
CHEBI:16027 (11)
CHEBI:16347 (11)
CHEBI:17295 (11)
CHEBI:26271 (10)
CHEBI:16708 (10)
CHEBI:28044 (10)
CHEBI:116314 (10)
CHEBI:64489 (10)
CHEBI:30413 (1)

Metabolite Name

Guanosine (19)
Hypoxanthine (19)
L-Tyrosine (17)
L-Arginine (15)
Adenosine (15)
Adenine (15)
Uridine (15)
Inosine (15)
L-Histidine (14)
Citric acid (14)
L-Tryptophan (14)
Creatine (14)
L-Phenylalanine (14)
Oleamide (13)
Azelaic acid (13)
Riboflavin (12)
Palmitic acid (12)
Cytidine (12)
Xanthine (12)
Thymidine (12)
Sucrose (12)
Uracil (11)
Thymine (11)
4-Pyridoxic acid (11)
Indolelactic acid (11)
Suberic acid (11)
Linoleic acid (11)
Adipic acid (11)
Myristic acid (11)
Glycerophosphocholine (11)

First Public Date

2017 (6)
2023 (2)
2020 (2)
2014 (2)
2013 (2)
2021 (1)

Modelling Approach

Ordinary differential equation model (2)
Boolean model (1)

Lab affiliation

School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (10)
Center for Neuroscience and Cell Biology – University of Coimbra (8)
ETH Zurich (7)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (7)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Center for Neuroscience and Cell Biology (5)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (5)
Institute of Botany, Chinese Academy of Sciences (5)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (4)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (4)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG&MUG, University of Gdansk, Gdansk, Poland (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Naval Research Laboratory (4)
School of Chemistry and Molecular Biosciences, The University of Queensland (4)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Novara, Italy (3)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (3)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (3)
Infection and Immunity Program, Biomedicine Discovery Institute & Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3800, Australia (3)
Institute for Molecular Biosciences, The University of Queensland (3)
Institute of Molecular Systems Biology, ETH Zurich (3)
Instituto de Salud Carlos III (3)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, IPHC UMR 7178, 67087 Strasbourg Cedex 2, France (3)
Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (3)
Laboratory of Mass Spectrometry, Core Facility Laboratories, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (3)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (3)
Section for Translational Surgical Oncology and Biobanking, Department of Surgery, University of Lübeck and University Hospital Schleswig-Holstein, Campus Lübeck, Germany (3)
Singapore Eye Research Institute (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)

IsPrivate

False (4)

Submitter Keywords

Not Peer Reviewed (1)

Classification

viruses (2)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
Not available (2)
4 (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (6)
Unknown experiment type (5)
RNA-seq of coding RNA (4)
Proteomic profiling by mass spectrometer (1)

Release Date

2021 (135)
2022 (128)
2020 (123)
2018 (120)
2023 (117)
2025 (113)
2019 (108)
2017 (99)
2024 (95)
2016 (42)
2015 (35)
2008 (18)
2007 (15)
2014 (15)
2010 (14)
2026 (13)
2013 (10)
2009 (9)
2006 (8)
2011 (6)
2012 (5)
2005 (5)
2004 (5)
2001 (2)
2002 (1)
2000 (1)
1998 (1)

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Acinetobacter sp. ANC 5600

Acinetobacter sp. ANC 5600 Genome sequencing and assembly

PRJNA375746 | ENA

Rhizobium sp. NCIM 5600

Genome sequencing, assembly, and annotation of Hyper-EPS secretor Rhizobium sp. NCIM 5600.

PRJNA1035331 | ENA

HO-5600 methanogenic enrichment culture

PRJNA783292 | ENA

Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).

Not available

S-EPMC3138073 | biostudies-literature

Spermine & Spermidine TripleTOF 5600

Sample came from Hershey and ABSCIEX TripleTOF 5600 coupled with HPLC system.

ORGANISM(S): Unknown

2022-11-21 | MSV000090757 | MassIVE

uncultured prokaryote

General Sample for Bacteria & Archaea from injection water 5600 Raw sequence reads

PRJNA392863 | ENA

Immunodepletion plasma proteomics by tripleTOF 5600 and Orbitrap elite/LTQ-Orbitrap Velos/Q exactive mass spectrometers.

Not available

S-EPMC3817719 | biostudies-literature

Efficacy and safety of weekly alendronate plus vitamin D₃ 5600 IU versus weekly alendronate alone in Korean osteoporotic women: 16-week randomized trial.

Not available

S-EPMC3990072 | biostudies-literature

iTRAQ LLC-PK1 CnI - Sum of peak intensities outperforms peak area integration in iTRAQ protein expression measurement by LC-MS/MS using a TripleTOF 5600+ platform

In the field of quantitative proteomics, the Isobaric Tags for Relative & Absolute Quanti-tation (iTRAQ) technology has demonstrated efficacy for proteome monitoring despite its lack of a consensus for data handling. In this study, after peptide and protein identification, we com-pared the widesprea...

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2019-08-19 | PXD007891 | Pride

Extracellular vesicles Trichuris muris

We analysed the exosomes secreted by the nematode Trichuris muris. Two replicates of exosomes were analysed using a 5600+ mass spectrometer

ORGANISM(S): Trichuris muris

2017-12-13 | PXD008387 | Pride

Exosomes Extracellular vesicles Trichuris muris

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2711 Results

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