Abundance proteomics

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Proteomics (9995)
Unknown (3441)
Genomics (174)
Transcriptomics (148)
Metabolomics (57)
Other (37)
Multiomics (9)

Organisms

Homo sapiens (623)
Mus musculus (139)
Caenorhabditis elegans (56)
Arabidopsis thaliana (26)
Saccharomyces cerevisiae (17)
Rattus norvegicus (15)
Staphylococcus aureus (8)
Sus scrofa (5)
Solanum tuberosum (4)
Chlamydomonas reinhardtii (3)
Xenopus laevis (3)
Campylobacter jejuni (3)
Dictyostelium discoideum (2)
Geobacter sulfurreducens (2)
Picea glauca (2)
Plasmodium falciparum (2)
Escherichia coli K-12 (2)
Plasmodium coatneyi (2)
Agrobacterium tumefaciens (1)
Bacteroides cellulosilyticus (1)
Dorea longicatena DSM 13814 (1)
Rhodopseudomonas palustris (1)
Saccharomyces paradoxus (1)
Ixodes scapularis (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Bartonella henselae (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
Mycobacterium tuberculosis (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)

Organisms

Homo sapiens (50)
Mus musculus (30)
Arabidopsis thaliana (4)
Caenorhabditis elegans (3)
Sus scrofa (3)
Rattus norvegicus (3)
Macaca mulatta (2)
Pseudomonas aeruginosa PAO1 (2)
Zea mays (2)
Streptomyces rimosus subsp. rimosus (1)
Halobacterium salinarum (1)
Caulobacter vibrioides NA1000 (1)
Spirodela polyrhiza (1)
Picea glauca (1)
Schmidtea mediterranea (1)
Alteromonas macleodii (1)
Campylobacter jejuni (1)
Escherichia coli K-12 (1)
Chlamydomonas reinhardtii (1)
Xenopus laevis (1)
Schizosaccharomyces pombe (1)
biofilm metagenome (1)
Saccharomyces cerevisiae (1)
Aspergillus fumigatus (1)
Staphylococcus aureus (1)
Escherichia coli (1)
Plasmodium falciparum (1)
human gut metagenome (1)

Repository

pride (7460)
PAXDB (960)
MassIVE (561)
iProX (385)
PeptideAtlas (364)
jPOST (172)
ENA (160)
geo (108)
biostudies-arrayexpress (78)
PanoramaPublic (71)
MetaboLights (53)
GPMDB (31)
EGA (4)
GNPS (3)
MetabolomicsWorkbench (1)

Tissue

Cell culture (1356)
Brain (418)
Epithelial cell (414)
Plant cell (264)
Blood plasma (256)
Liver (229)
Leaf (208)
Permanent cell line cell (176)
Heart (169)
Blood (165)
Fibroblast (151)
Kidney (145)
Blood serum (137)
Digestive System (103)
Breast (73)
Others (49)
Female Reproductive System (8)
Male Reproductive System (8)
Plasma Non-glyco (7)
Large Intestine (6)
Liver (3)
Spleen (3)
Plant (1)
Adrenal Gland (1)
Brain (1)
Kidney (1)
Lung (1)
Ovary (1)
Pancreas (1)
Urine (1)

Disease

Disease free (148)
Breast cancer (144)
Colon cancer (80)
Acute leukemia (58)
Cervix carcinoma (51)
Alzheimer's disease (50)
Cardiovascular system disease (47)
Wounds and Injuries (38)
Parkinson's disease (37)
Plasmodium falciparum malaria (37)
Breast Carcinoma (36)
COVID-19 (33)
Melanoma (32)
Not Available (31)
Malignant neoplasm of ovary (31)
Influenza (25)
Lymphoma (24)
Brain cancer (22)
Pancreatic cancer (19)
Amyotrophic lateral sclerosis (16)
Brain glioblastoma multiforme (16)
Cystic fibrosis (16)
Glioblastoma (16)
Obesity (16)
Prostate adenocarcinoma (16)
Tuberculosis (16)
Type 2 diabetes mellitus (16)
Human immunodeficiency virus infectious disease (15)
Colorectal Carcinoma (5)
High Grade Ovarian Serous Adenocarcinoma (1)

Technology Type

Mass Spectrometry (7461)
Shotgun proteomics (4031)
Bottom-up proteomics (1673)
Data-dependent acquisition (983)
Affinity purification coupled with mass spectrometry proteomics (616)
Data-independent acquisition (487)
Gel-based experiment (431)
SWATH MS (308)
Top-down proteomics (233)
SRM/MRM (143)
Chemical cross-linking coupled with mass spectrometry proteomics (75)
HDMSE (69)
Mass spectrometry (50)
DiaPASEF (48)
All-ion fragmentation (46)
Affinity proteomics (30)
MSE (30)
Mass spectrometry imaging (18)
Metaproteomics (18)
Immunopeptidomics (11)
Proteogenomics (10)
Glycoproteomics (8)
Olink affinity proteomics (7)
SomaScan affinity proteomics (5)
Mass spectrometry assay (3)
NMR spectroscopy (2)
RNA mass spectrometry (2)
Illumina HiSeq 2000 (1)
EI (1)
PAcIFIC (1)

Instrument Platform

LTQ Orbitrap Velos (231)
Q Exactive (92)
LTQ Orbitrap Elite (80)
Orbitrap Fusion Lumos (65)
Orbitrap Fusion (48)
Q Exactive Plus (46)
LTQ Orbitrap (39)
LTQ (38)
Q Exactive HF (35)
Instrument (31)
Orbitrap Exploris 480 (30)
Orbitrap Eclipse (26)
Q Exactive HF-X (24)
LTQ Orbitrap XL (13)
TimsTOF Pro (12)
TripleTOF 5600 (11)
LTQ XL (6)
TripleTOF 6600 (6)
Orbitrap Fusion ETD (5)
LTQ Velos (4)
MaXis (4)
Orbitrap Astral (4)
SepSolve GCxGC-BenchTOF (4)
6550 iFunnel Q-TOF LC/MS (3)
TSQ Quantiva (3)
Illumina Genome Analyzer II (2)
NextSeq 1000 (1)
NextSeq 2000 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)

Publication Date

2025 (1323)
2026 (1177)
2023 (1134)
2024 (1026)
2022 (1000)
2021 (865)
2020 (741)
2019 (560)
2018 (449)
2014 (422)
2015 (344)
2016 (306)
2017 (301)
2013 (156)
2012 (86)
2011 (64)
2010 (43)
2008 (39)
2009 (33)
2006 (21)
2005 (14)
2007 (12)
2003 (4)

UNIPROT ID/AC

KPYM_HUMAN (246)
1433E_HUMAN (245)
1433G_HUMAN (245)
1433Z_HUMAN (245)
ALDOA_HUMAN (245)
CALR_HUMAN (245)
EF1A1_HUMAN (245)
ENOA_HUMAN (245)
G6PI_HUMAN (245)
GDIB_HUMAN (245)
HS90A_HUMAN (245)
HSP7C_HUMAN (245)
HSPB1_HUMAN (245)
MYH9_HUMAN (245)
PPIA_HUMAN (245)
PRDX2_HUMAN (245)
TKT_HUMAN (245)
UBA1_HUMAN (245)
1433T_HUMAN (244)
6PGD_HUMAN (244)
EF2_HUMAN (244)
G3P_HUMAN (244)
GANAB_HUMAN (244)
HS90B_HUMAN (244)
PGAM1_HUMAN (244)
PRDX1_HUMAN (244)
TBA1C_HUMAN (244)
TLN1_HUMAN (244)
TPM3_HUMAN (244)
1433F_HUMAN (243)

ENSEMBL ID

ENSG00000170477 (248)
ENSG00000229353 (171)
ENSG00000147251 (130)
ENSG00000247315 (78)
ENSG00000204131 (77)
ENSG00000176092 (38)
ENSMUSG00000072849 (6)
ENSMUSG00000057465 (5)
ENSMUSP00000141097 (3)
ENSMUSG00000076586 (1)
ENSMUSG00000076591 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094930 (1)
ENSMUSG00000096833 (1)
ENSMUSG00000098557 (1)
ENSMUSG00000098814 (1)

CHEBI ID

CHEBI:28044 (13)
CHEBI:6650 (12)
CHEBI:27897 (12)
CHEBI:30769 (12)
CHEBI:22660 (11)
CHEBI:16708 (11)
CHEBI:7916 (11)
CHEBI:16335 (11)
CHEBI:26271 (10)
CHEBI:15891 (10)
CHEBI:18237 (10)
CHEBI:15978 (10)
CHEBI:17368 (10)
CHEBI:17822 (9)
CHEBI:25017 (9)
CHEBI:29016 (9)
CHEBI:16704 (9)
CHEBI:15741 (9)
CHEBI:32816 (9)
CHEBI:16449 (9)
CHEBI:16919 (9)
CHEBI:17596 (9)
CHEBI:18186 (8)
CHEBI:26986 (8)
CHEBI:16811 (8)
CHEBI:28300 (8)
CHEBI:27266 (8)
CHEBI:17568 (8)
CHEBI:16235 (8)
CHEBI:15428 (8)

Metabolite Name

Succinic acid (6)
Phenylalanine (6)
Adenine (6)
Serine (5)
Hypoxanthine (5)
Phenylalanine (5)
Valine (5)
Leucine (5)
Taurine (5)
Citric acid (5)
Adenosine (5)
Cytosine (5)
Alanine (5)
Proline (5)
Creatine (5)
Leucine (4)
Proline (4)
Tyrosine (4)
Threonine (4)
Glutamine (4)
Isoleucine (4)
Glycine (4)
Valine (4)
Carnitine (4)
Pyridoxine (4)
Pyruvic acid (4)
Pantothenic acid (4)
Arginine (4)
Guanine (4)
Phosphocreatine (4)

First Public Date

2025 (32)
2026 (30)
2024 (17)
2023 (14)
2021 (13)
2020 (12)
2022 (9)
2014 (9)
2017 (8)
2019 (5)
2018 (4)
2016 (4)
2015 (2)
2013 (1)

Classification

bacteria (6)
fungi (1)
protozoa (1)

Modification

2x(15)N labeled L-lysine (17)
N6 (17)
4x(15)N labeled L-arginine (16)
15.994915 (12)
4-tetrahydrothiazine-3-carboxylic acid (11)
57.021464 (11)
Not available (11)
N6-dimethyl-L-lysine (7)
42.010565 (5)
+3amu) (4)
-18.010565 (4)
4 (4)
-17.026549 (3)
15.99491 (2)
3x(2)H labeled N6-acetyl-L-lysine (2)
4x(2)H labeled dimethylated residue (2)
57.02146 (2)
0.984 (1)
0.984016 (1)
3'' (1)
4'-dihydroxyphenylalanine (1)
79.966331 (1)
Heavy form - site K (1)
Light form - site K (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (20)
Proteomic profiling by array (11)
Unknown experiment type (2)
Antigen profiling (2)
ChIP-seq (2)
Transcription profiling by SAGE (1)
Proteomic profiling by mass spectrometer (1)
Other (1)
Single nucleus RNA sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (360)
2025 (358)
2022 (324)
2023 (303)
2024 (279)
2020 (247)
2019 (230)
2018 (217)
2017 (197)
2016 (187)
2015 (160)
2014 (146)
2013 (109)
2012 (76)
2010 (73)
2011 (67)
2026 (55)
2009 (50)
2008 (30)
2007 (22)
2005 (13)
2006 (7)
2004 (4)
2003 (3)
2002 (1)
2001 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (58)
Head of the Curie Institute Mass Spectrometry Platform (54)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (24)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (22)
Harvard Medical School (16)
North Carolina State University (16)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (15)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (15)
UCSD (15)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (11)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (11)
University of Edinburgh (11)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (10)
School of Biological Sciences, Nanyang Technological University, Singapore (10)
The University of Melbourne (10)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (9)
Centre for Proteome Research, University of Liverpool, Liverpool, UK (9)
ETH Zurich (9)
Institute of Molecular Systems Biology, ETH Zurich (9)
Liverpool John Moores University (9)
Professor (9)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (9)
Brigham and Women's Hospital, Harvard Medical School (8)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (8)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (8)
School of Biological Sciences, Nanyang Technological University (8)
University of Vienna (8)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (8)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (8)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)

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Proteomics reveals an increase in the abundance of glycolytic and ethanolic fermentation enzymes in developing sugarcane culms during sucrose accumulation

Not available

ORGANISM(S): Saccharum spp

ST001879 | MetabolomicsWorkbench

Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics

Sweet cherry (Prunus avium L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Ba...

2021-10-29 | MTBLS1803 | MetaboLights

Xiao-Chai-Hu-Tang alleviates irinotecan-induced diarrhea via TGR5-FAK-RhoA/Rock signaling revealed by integrated metabolomics and proteomics

Irinotecan (CPT-11) is widely used for colorectal cancer treatment, with delayed-onset diarrhea as its primary side effect. Xiao-Chai-Hu-Tang (XCHT) has been clinically observed to alleviate diarrhea, but its mechanisms remain unclear. This study aimed to explore the underlying regulatory mechani...

2025-09-03 | MTBLS12931 | MetaboLights

Biological Characteristics of SARS-CoV-2 Resistant Populations: A Cohort Comparison Study through Integrated Gut Microbiota Sequencing, Metabolomics and Proteomics

Objective: Most research reports on COVID-19 infections have focused on the correlation between the severity of the disease symptoms and immune deficits, while the mechanisms affecting the susceptibility to SARS-CoV-2 remain largely unknown. The study aimed to comprehensively analyze the differen...

2025-06-28 | MTBLS12654 | MetaboLights

mRNA-Seq expression and MS3 proteomics profiling of human post-mortem BA9 brain tissue for Parkinson Disease and neurologically normal individuals

Parkinson disease (PD) is a neurodegenerative disease characterized by the accumulation of alpha-synuclein (SNCA) and other proteins in aggregates termed â€œLewy Bodiesâ€ within neurons. PD has both genetic and environmental risk factors, and while processes leading to aberrant protein aggregation ...

ORGANISM(S): Homo sapiens

2016-01-15 | E-GEOD-68719 | biostudies-arrayexpress

Proteomics of Saccharomyces cerevisiae Organelles.

Not available

S-EPMC2849710 | biostudies-literature

ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects.

Not available

S-EPMC4630118 | biostudies-literature

Proteomics insights into DNA damage response and translating this knowledge to clinical strategies.

Not available

S-EPMC5333460 | biostudies-literature

Evaluation of three high abundance protein depletion kits for umbilical cord serum proteomics.