Acanthamoeba - OmicsDI

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Unknown (771)
Genomics (238)
Transcriptomics (37)
Proteomics (29)
Metabolomics (2)
Other (1)

Organisms

Acanthamoeba castellanii (17)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (5)
Legionella pneumophila (4)
Naegleria gruberi (4)
Spizellomyces punctatus (3)
Creolimax fragrantissima (3)
Homo sapiens (2)
Cryptococcus neoformans (2)
Escherichia coli (2)
Candidatus Protochlamydia amoebophila (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028 (2)
Guillardia theta (2)
Bigelowiella natans (2)
Acanthamoeba sp. (2)
Dictyostelium discoideum (2)
Nematostella vectensis (2)
Physcomitrium patens (2)
Tetrahymena thermophila (2)
Pseudomonas fluorescens (2)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
Waddlia chondrophila (1)
Cafeteria roenbergensis virus BV-PW1 (1)
Acanthamoeba polyphaga mimivirus (1)
Entamoeba histolytica (1)
Rattus norvegicus (1)
Mus musculus (1)
Cyanophora paradoxa (1)
Campylobacter jejuni (1)
Escherichia coli O157:H7 str. EDL933 (1)

Organisms

protist metagenome (70)
Acanthamoeba castellanii (22)
eukaryotic plankton metagenome (12)
Acanthamoeba lenticulata (3)
Acanthamoeba triangularis (3)
Acanthamoeba astronyxis (3)
Cryptococcus neoformans (3)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028 (2)
Acanthamoeba polyphaga mimivirus (2)
Aeromonas media (2)
Candidatus Chryseobacterium massiliensis URChM1 (2)
Acanthamoeba sp. (2)
Parachlamydia acanthamoebae (2)
Legionella pneumophila (2)
Acanthamoeba castellanii medusavirus (2)
Acanthamoeba polyphaga (1)
Acanthamoeba polyphaga lentillevirus (1)
Candidatus Amoebophilus asiaticus 5a2 (1)
Parachlamydiaceae bacterium HS-T3 (1)
Candidatus Jidaibacter acanthamoebae (1)
Candidatus Protochlamydia naegleriophila (1)
Candidatus Protochlamydia amoebophila UWE25 (1)
Mollivirus sibericum (1)
Mimivirus (1)
Acanthamoeba castellanii str. Neff (1)
Pandoravirus aubagnensis (1)
Parachlamydia acanthamoebae UV-7 (1)
Pandoravirus belohorizontensis (1)
502779 (1)

Repository

ENA (234)
geo (29)
pride (25)
biostudies-arrayexpress (13)
MassIVE (2)
GNPS (1)
iProX (1)
jPOST (1)
MetaboLights (1)

Tissue

Macrophage (1)

Technology Type

Mass Spectrometry (25)
Shotgun proteomics (15)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (2)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (2)
LTQ Orbitrap Velos (2)
Easy-nLC 1000 UHPLC system (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2025 (11)
2026 (9)
2022 (9)
2011 (8)
2024 (7)
2010 (4)
2019 (4)
2023 (3)
2016 (3)
2013 (3)
2020 (3)
2017 (2)
2018 (2)
2009 (1)
2021 (1)
2015 (1)
2014 (1)

CHEBI ID

CHEBI:59059 (1)
CHEBI:143859 (1)
CHEBI:89723 (1)
CHEBI:82344 (1)
CHEBI:89255 (1)
CHEBI:80946 (1)
CHEBI:88964 (1)
CHEBI:87429 (1)
CHEBI:4614 (1)
CHEBI:77927 (1)
CHEBI:133246 (1)
CHEBI:52052 (1)
CHEBI:89762 (1)
CHEBI:5672 (1)
CHEBI:89015 (1)
CHEBI:37070 (1)
CHEBI:78304 (1)
CHEBI:77928 (1)
CHEBI:89254 (1)
CHEBI:35986 (1)
CHEBI:77930 (1)
CHEBI:17700 (1)
CHEBI:41253 (1)
CHEBI:28878 (1)
CHEBI:16638 (1)
CHEBI:49000 (1)
CHEBI:48945 (1)
CHEBI:16310 (1)
CHEBI:15688 (1)
CHEBI:49019 (1)

Metabolite Name

Pyrazine, 2,5-dimethyl- (1)
Butanethioic acid, S-methyl ester (1)
Pyrazine, methyl- (1)
Methane, isocyanato- (1)
Pyrazine, tetramethyl- (1)
Phenol, 2,5-bis(1,1-dimethylethyl)- (1)
Butanoic acid, 3-methyl-, butyl ester (1)
1-Propanol, 3-(methylthio)- (1)
5-Hepten-2-one, 6-methyl- (1)
1-Butanol, 2-methyl- (1)
Acetic acid, butyl ester (1)
3-Octanone (1)
Methyl Isobutyl Ketone (1)
Butyl 2-methylbutanoate (1)
Butanoic acid, butyl ester (1)
Benzyl methyl ketone (1)
Butanoic acid, 2-methyl- (1)
Butanoic acid, 3-methyl- (1)
Butanal, 3-methyl- (1)
Propanoic acid, 2-methyl- (1)
Phenylethyl Alcohol (1)
1-Dodecanol (1)
2-Nonanone (1)
2-Heptanone (1)
2-Pentadecanone (1)
2-Nonanol (1)
2-Tridecanone (1)
1-Nonanol (1)
2-Undecanol (1)
2-Undecanone (1)

First Public Date

2025 (83)
2024 (31)
2020 (19)
2014 (15)
2013 (15)
2022 (14)
2026 (13)
2021 (11)
2017 (9)
2023 (8)
2018 (5)
2015 (4)
2019 (3)
2016 (2)
2012 (2)

Classification

protozoa (41)
viruses (13)
bacteria (10)
fungi (3)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (11)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2025 (81)
2022 (71)
2024 (61)
2023 (60)
2021 (57)
2020 (47)
2018 (40)
2019 (39)
2017 (39)
2016 (37)
2013 (31)
2015 (30)
2014 (29)
2011 (21)
2010 (20)
2008 (17)
2012 (15)
2009 (14)
2006 (13)
2026 (10)
2005 (10)
2007 (9)
2002 (7)
1999 (5)
1998 (5)
2004 (4)
2003 (4)
2001 (4)
2000 (3)
1997 (1)

Lab affiliation

EDyP (9)
CNPEM (2)
Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona 08003, Catalonia, Spain (1)
Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain. (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Vestec, Czech Republic. (1)
Department of parasitology, College of Medicine, National Cheng Gung University, Tainan, Taiwan (1)
Dept. of Molecular & Cell Biology, Boston University, Boston, Massachusetts (1)
Exploring the Dynamics of Proteomes (EDyP) (1)
Institute of Microbiology, University of Greifswald, Felix-Hausdorff-Strasse 8, 17489 Greifswald, Germany (1)
Instituto Biomédico, Departamento de Microbiologia e Parasitologia – MIP, Universidade Federal Fluminense (1)
Instituto Biomédico, Departamento de Microbiologia e Parasitologia – MIP, Universidade Federal Fluminense, Rua Prof. Hernani Pires de Melo 101, São Domingos, Niterói-RJ, Brazil, ZipCode 24210-130, Phone: +55 21 2629-2410 (1)
Laboratoire Ecologie et Biologie des Interactions, UMR CNRS 7267 Université de Poitiers ; UFR SFA; Pole Biologie Sante Bât. B36/B37 ; 1 Rue Georges Bonnet ; TSA 51106 86073 POITIERS Cedex 9, FRANCE (1)
London School of Hygiene and Tropical Medicine (1)
Research Group “Structural Interactomics”, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert-Roessle-Str. 10 13125 Berlin, Germany (1)
Weizmann Institute of Science Department of Structural Biology Faculty of Chemistry (1)

Tags

pathogen (67)
pathogen:protozoan (41)
pathogen:virus (13)
pathogen:bacterium (10)
xref:PubMed:41513996 (3)
pathogen:fungus (3)
xref:PubMed:21747786 (2)
xref:PubMed:39731681 (1)
xref:PubMed:32315247 (1)
xref:PubMed:31221647 (1)
xref:PubMed:23071316 (1)
xref:PubMed:20023027 (1)
xref:PubMed:24460765 (1)
xref:PubMed:9872781 (1)
xref:PubMed:25908022 (1)
xref:PubMed:20360389 (1)
xref:PubMed:40712095 (1)
xref:PubMed:34445780 (1)
xref:PubMed:26934669 (1)
xref:PubMed:36296171 (1)
xref:PubMed:31088922 (1)
xref:PubMed:31703112 (1)
xref:PubMed:37882527 (1)
xref:PubMed:34999767 (1)
xref:PubMed:28593198 (1)
xref:PubMed:27888770 (1)
xref:PubMed:27516530 (1)
xref:PubMed:21408607 (1)
xref:PubMed:15073324 (1)
xref:PubMed:41709453 (1)

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Transcription profiling of Acanthamoeba polyphaga mimivirus infecting Acanthamoeba castellanii for different lengths of time

A culture of Acanthamoeba castellanii cells was infected with mimivirus. At specified times after infection, infected cells aliquots were subjected to total RNA extraction. Cy3 labeled cDNA was hybridized on custom designed Agilent oligonucleotide tiling microarrays covering both strands of the mimi...

ORGANISM(S): Acanthamoeba polyphaga mimivirus

2010-03-18 | E-MTAB-187 | biostudies-arrayexpress

Acanthamoeba castellanii

Acanthamoeba castellanii Transcriptome or Gene expression

PRJNA1195399 | ENA

Acanthamoeba sp. overview

PRJNA1091745 | ENA

Acanthamoeba triangularis

Acanthamoeba triangularis Genome sequencing

PRJNA880557 | ENA

Phylogenomics of Acanthamoeba species.

Phylogenomics of Acanthamoeba species.

PRJEB7687 | ENA

Acanthamoeba castellanii

RNAseq data from Acanthamoeba castellanii

PRJNA794325 | ENA

Acanthamoeba triangularis strain:WU19001

Acanthamoeba triangularis strain:WU19001

PRJNA967176 | ENA

Acanthamoeba sp.

small subunit of the ribosomal RNA gene of acanthamoeba

PRJNA1091168 | ENA

Comprehensive Characterization of Extracellular Vesicles by Environmental (Neff) and Clinical (T4) Strains of Acanthamoeba castellanii

Proteomics, lipidomics, and metabolomics analysis of extracellular vesicles secreted by an environmental strain and a clinical strain of Acanthamoeba castellanii.

ORGANISM(S): Acanthamoeba Castellanii (ncbitaxon:5755)

2024-04-05 | MSV000094477 | MassIVE

Acanthamoeba castellanii strain:Neff

Acanthamoeba castellanii

PRJNA20303 | ENA

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