Adam P P - OmicsDI

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Unknown (2107)
Transcriptomics (1363)
Genomics (148)
Proteomics (132)
Metabolomics (74)
Genomic (9)
Models (8)
Multiomics (3)
Other (2)

Organisms

Homo sapiens (589)
Mus musculus (353)
Rattus norvegicus (47)
Saccharomyces cerevisiae (43)
Danio rerio (36)
Arabidopsis thaliana (32)
Oryza sativa (23)
Drosophila melanogaster (23)
Oryza sativa Japonica Group (18)
Staphylococcus aureus (11)
Caenorhabditis elegans (11)
Sus scrofa (10)
Vibrio harveyi (9)
Candida albicans (9)
Escherichia coli (8)
Schizosaccharomyces pombe (7)
Ovis aries (7)
Shewanella oneidensis MR-1 (6)
Mycobacterium tuberculosis (6)
Streptococcus pneumoniae (6)
Gallus gallus (6)
Aspergillus niger (5)
Podospora anserina (5)
Macaca fascicularis (5)
Anopheles gambiae (5)
Bos taurus (5)
Sphingomonas sp. LH128 (4)
Schistosoma japonicum (4)
Geobacter metallireducens (1)
cellular organisms (1)

Organisms

Homo sapiens (6)
Xenopus laevis (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Populus trichocarpa (1)

Repository

biostudies-arrayexpress (1403)
EGA (102)
MassIVE (80)
GNPS (50)
pride (49)
MetaboLights (24)
ENA (12)
dbGaP (9)
BioModels (8)
geo (2)
iProX (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (11)
Epithelial cell (7)
Blood serum (4)
Leaf (4)
Blood (3)
Plant cell (2)
Blood plasma (2)
Fibroblast (2)
Lung (2)
Permanent cell line cell (2)
Liver (2)
Colon (2)
Basidiospore (1)
Pedal muscle (1)
Skin epithelium (1)
Corpus luteum (1)
Cervicovaginal fluid (1)
Endothelial cell (1)
Seedling (1)
Breast (1)
Extracellular vesicle (1)
Urine (1)
Skin (1)
Cerebral cortex (1)
Egg (1)
Macrophage (1)
Brain (1)
Cell suspension culture (1)
Embryonic axis (1)
HeLa cell (1)

Disease

Normal (5)
Colon cancer (2)
Testicular seminoma (1)
Unspecified peripheral T-cell lymphoma (1)
Ependymoma (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
Scrapie infected (1)
Primary tumor (1)
Dukes D primary colon cancer (1)
Mock infected (1)
Colon cancer metastasis (1)
Infected (1)
Rheumatoid arthritis (1)
None- acute control (1)
Invasive lobular carcinoma (1)
Non-infected (1)
Squamous cell carcinoma (1)
IBDV infected (1)
Acute Myeloid Leukemia (1)
Neurological disease (1)
Benign adenoma (1)
Reference (1)
Chicken Anaemia Virus infected (1)
None- Acute Control (1)
Psoroptes ovis infestation (1)
Carcinoma (1)
Lung cancer (1)
Central nervous system cancer (1)
Neurofibromatosis type 1 (1)

Technology Type

Mass Spectrometry (49)
Shotgun proteomics (30)
Mass spectrometry (23)
Bottom-up proteomics (7)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
Illumina HiSeq 2000 (3)
Illumina Genome Analyzer II (2)
SWATH MS (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Life Tech - Solid (1)
NMR spectroscopy assay (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (17)
NextSeq 500 (15)
Illumina HiSeq 4000 (12)
Illumina HiSeq 2500 (9)
NextSeq 2000 (8)
Illumina MiSeq (5)
G2565BA DNA microarray scanner [Agilent] (4)
ScanArray 5000 [PerkinElmer] (3)
GenePix Professional 4200A [Axon Instruments] (3)
GenePix 4000A [Axon Instruments] (3)
Illumina NovaSeq X (3)
DNBSEQ-G400 (2)
DNBSEQ-T7 (2)
NextSeq 550 (2)
Bravo automated liquid handling robot station (Agilent) (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
GeneQuant DNA/RNA caluculator (1)
Lightwave (1)
Axon Instruments GenePix 4000B scanner (1)
IScan (Illumina) (1)
Illumina HiScanSQ (1)
Agilent G2505B scanner (1)
NanoDrop (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
Variable Atmosphere Incubator (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)

Publication Date

2012 (258)
2011 (196)
2010 (192)
2013 (190)
2014 (155)
2015 (100)
2016 (85)
2008 (52)
2005 (44)
2009 (40)
2017 (36)
2026 (30)
2019 (28)
2007 (28)
2021 (25)
2025 (24)
2024 (23)
2023 (23)
2020 (23)
2018 (21)
2022 (20)
2006 (19)
2003 (1)

CHEBI ID

CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)
CHEBI:46502 (1)
CHEBI:36272 (1)
CHEBI:30518 (1)
CHEBI:36271 (1)
CHEBI:26894 (1)
CHEBI:9474 (1)
CHEBI:45729 (1)
CHEBI:27902 (1)
CHEBI:71392 (1)
CHEBI:77932 (1)

Metabolite Name

Valine (5)
Proline (5)
Phenylalanine (5)
Leucine (5)
Isoleucine (5)
Tyrosine (4)
Taurine (4)
Serine (4)
Ornithine (4)
Methionine (4)
Lysine (4)
Histidine (4)
Citrulline (4)
Choline (4)
Arginine (4)
Alanine (4)
3-phosphoglycerate (4)
Propionylglycine (3)
Isovalerylglycine (3)
Hexanoylglycine (3)
Maltose (3)
Cholesterol (3)
Sucrose (3)
Alpha-ketoglutarate (3)
Tryptophan (3)
Threonine (3)
Pyruvate (3)
Malate (3)
Kynurenine (3)
Glycine (3)

First Public Date

2014 (5)
2025 (2)
2021 (2)
2018 (2)
2024 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (1)

Lab affiliation

Institute of Plant Sciences Faculty of Agriculture The Hebrew University of Jerusalem Rehovot 76100 ISRAEL (2)
CEA Grenoble, Commissariat à l'Energie Atomique et aux Energies Alternatives (1)
Translational proteomics, Institut de recherches cliniques de Montréal (IRCM), Canada (1)
Marseille Protéomique, Inserm, CNRS, IPC (1)
Department of Pharmaceutics and Pharmacotherapy (1)
Dpt of Medical Microbiology, University of Manitoba, Winnipeg, Canada National HIV and Retrovirology Labs, JC Wilt infectious Disease Centre, Public Health Agency of Canada, Winnipeg, Canada Department of Medicine Solna, Unit of Infectious diseases, Center for Molecular Medicine, Karolinska Institutet, Stocholm, Sweden (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Beutenbergstrasse 11, 07745 Jena, Germany (1)
Biotechnology Department, Faculty of Biology, Adam Mickiewicz University, Umultowska Street 89, 61-614 Poznań, Poland (1)
The University of North Carolina at Chapel Hill, Pharmacology Department (1)
University Medical Center Groningen and University of Groningen (1)
Laboratory of Genome Biology, Institute of Molecular Biology and Biotechnology, Adam 8 Mickiewicz University, 61-614 Poznan, Poland (1)
Neurodegeneration Pathobiology Laboratory, Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia (1)
Associate Professor Department of Physiology Medical College of Wisconsin (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
Biochemistry & Proteomics Group, Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, USA (1)
Biotech Research & Innovation Center (BRIC), University of Copenhagen, Denmark (1)
National Institute of Standards and Technology (1)
Department of Pharmaceutics and Pharmacotherapy, Virginia Commonwealth University (1)
Earth and Enviornmental Sciences; Rutgers University-Newark; Newark, NJ, USA (1)
University of Tübingen Interfaculty Institute for Cell Biology Department of Immunology Auf der Morgenstelle 15 72076 Tuebingen Germany (1)
Department of Biology, University of York, UK (1)
Max Planck Institute for Biology of Ageing, Cologne, Germany CECAD, University of Cologne, Cologne, Germany (1)
1Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia. 2Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Faculty of Medicine, Nursing & Health Sciences, Monash University, Victoria 3800, Australia. (1)
Sequence database group (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada. (1)
Department of Gene Expression, Laboratory of RNA Processing, Institute of Molecular Biology and Biotechnology, Faculty of Biology and Center for Advanced Technology, Adam Mickiewicz University, Poland (1)
Department III of Internal Medicine, Heart Center, Faculty of Medicine and University Hospital of Cologne, 50937 North Rhine-Westphalia, Germany; Institute of Pathology, University Medical Center Göttingen, 37075 Göttingen, Germany (1)
Department of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, Florida) (1)
Institute for Microbial and Biochemical Sciences, USDA Forest Products Laboratory, Madison WI (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (4)

Submitter Keywords

FROG (2)

Modification

Not available (2)

Study type

Transcription profiling by array (1050)
RNA-seq of coding RNA (91)
Comparative genomic hybridization by array (71)
ChIP-seq (27)
Methylation profiling by array (24)
ChIP-chip by tiling array (19)
Transcription profiling by tiling array (15)
ChIP-chip by array (14)
Unknown experiment type (13)
RNA-seq of coding RNA from single cells (10)
RNA-seq of non coding RNA (9)
Other (7)
DNA-seq (6)
Genotyping by array (5)
Cell line - High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
Spatial transcriptomics by high-throughput sequencing (3)
Ribo-seq (3)
One-color microarray (2)
Animal - High-throughput sequencing (2)
RIP-seq (2)
Proteomic profiling by array (2)
GRO-seq (1)
Transcription profiling by SAGE (1)
Cell line - Single-cell sequencing (1)
Plant - Two-color microarray (1)
Animal - One-color microarray (1)
High-throughput sequencing (1)
Trajectory (1)
RNAi profiling by array (1)

Release Date

2022 (297)
2023 (288)
2012 (282)
2025 (244)
2021 (233)
2013 (219)
2011 (215)
2010 (211)
2014 (210)
2024 (207)
2020 (205)
2015 (159)
2019 (128)
2018 (118)
2016 (113)
2017 (104)
2026 (61)
2008 (56)
2009 (50)
2005 (49)
2007 (27)
2006 (22)
2003 (4)
2002 (4)
2004 (1)
2001 (1)
1997 (1)

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Mycobacterial p(1)-type ATPases mediate resistance to zinc poisoning in human macrophages.

Mycobacterium tuberculosis thrives within macrophages by residing in phagosomes and preventing them from maturing and fusing with lysosomes. A parallel transcriptional survey of intracellular mycobacteria and their host macrophages revealed signatures of heavy metal poisoning. In particular, mycobac...

ORGANISM(S): Mycobacterium tuberculosis

2012-01-27 | E-BUGS-122 | biostudies-arrayexpress

Field test for diagnostic P deficiency genes

ORGANISM(S): Solanum tuberosum

2012-04-12 | E-MTAB-634 | biostudies-arrayexpress

Transcriptional response to P withdrawal in potato leaves

ORGANISM(S): Solanum tuberosum

2012-04-12 | E-MTAB-629 | biostudies-arrayexpress

Capturing the dynamic RNA landscape of the malaria parasite P. falciparum

To date, total mRNA analysis throughout intraerythrocytic development of the malaria parasite, Plasmodium falciparum, has only revealed abundance profiles of each gene at a given time. Here, we establish a new methodology in Plasmodium falciparum that enables biosynthetic labeleing and capture of su...

ORGANISM(S): Plasmodium falciparum

2015-09-04 | E-GEOD-72695 | biostudies-arrayexpress

Transcriptome analysis of poplar during leaf spot infection with Sphaerulina spp.

Diseases of poplar caused by the fungal pathogen Sphaerulina musiva and related species are of growing concern, particular with the increasing interest in intensive popluliculture to meet increasing energy demands. S. musiva is able to cause infection on leaves, resulting in defoliation and canker f...

ORGANISM(S): Populus balsamifera

2015-08-28 | E-GEOD-67697 | biostudies-arrayexpress

Global-gene expression of Phytophthora phaseoli

Lima bean is an important vegetable processing crop to the Mid-Atlantic U.S. and is highly susceptible to the oomycete pathogen Phytophthora phaseoli, which causes downy mildew. P. phaseoli resides in the same clade with the late blight pathogen, Phytophthora infestans. Genetic resistance and fung...

ORGANISM(S): Phytophthora phaseoli

2011-08-01 | E-GEOD-23453 | biostudies-arrayexpress

ADAM 12 protease induces adipogenesis in transgenic mice.

Not available

S-EPMC1850877 | biostudies-literature

Protease profiling of liver fibrosis reveals the ADAM metallopeptidase with thrombospondin type 1 motif, 1 as a central activator of transforming growth factor beta

During chronic liver disease, tissue remodeling leads to dramatic changes and accumulation of matrix components. Matrix metalloproteases and their inhibitors have been involved in the regulation of matrix degradation. However, the role of other proteases remains incompletely defined. We undertook a ...

ORGANISM(S): Homo sapiens

2012-01-05 | E-GEOD-24667 | biostudies-arrayexpress

Scleroderma and Gleevec treatment

Total RNA was extracted from skin biopsies before and after imatinib (Gleevec) treatment using Qiagen RNeasy fibrous tissue kit. RNA was amplified using the Ambion Amino Allyl MessageAmp II aRNA kit. Amplified skin RNA (labeled with Cy5) and amplified Stratagene Human Universal Reference RNA (labele...

ORGANISM(S): Homo sapiens

2009-03-31 | E-GEOD-11130 | biostudies-arrayexpress

ADAM-17 regulates endothelial cell morphology, proliferation, and in vitro angiogenesis.

Not available

S-EPMC2875258 | biostudies-literature

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