Adams - OmicsDI

Show results for

Unknown (10652)
Transcriptomics (219)
Genomics (186)
Proteomics (107)
Metabolomics (17)
Models (8)
Genomic (1)
Other (1)

Organisms

Homo sapiens (144)
Mus musculus (59)
Arabidopsis thaliana (14)
Bos taurus (6)
Saccharomyces cerevisiae (5)
Macaca nemestrina (4)
Rattus norvegicus (4)
Populus deltoides (3)
Polistes metricus (3)
Populus tremula x Populus alba (3)
Geobacter sulfurreducens (3)
Brucella melitensis (2)
Pyrococcus furiosus DSM 3638 (2)
Micrococcus luteus NCTC 2665 (2)
Oncorhynchus nerka (2)
Xenopus laevis (2)
Caldicellulosiruptor kronotskyensis (1)
Brucella suis 1330 (1)
Metallosphaera sedula DSM 5348 (1)
Methanococcus maripaludis S2 (1)
Heterorhabditis bacteriophora (1)
Tursiops truncatus (1)
Apis mellifera ligustica (1)
Saccharomyces uvarum (1)
Mus caroli (1)
Populus tremula x Populus tremuloides (1)
Picea glauca (1)
Apis mellifera (1)
Zea mays (1)
Apis mellifera mellifera (1)

Organisms

Mus musculus (44)
Homo sapiens (26)
Bos taurus (5)
Macaca nemestrina (3)
Arabidopsis thaliana (3)
Brucella melitensis (2)
Iphiculus spongiosus (1)
Plectotropis mackensii (1)
Tympanuchus cupido pinnatus (1)
Pyrococcus furiosus (1)
Micrococcus luteus NCTC 2665 (1)
Eubacterium limosum (1)
Oncorhynchus nerka (1)
Pyrococcus furiosus DSM 3638 (1)
Brucella melitensis bv. 1 str. 16M (1)
Xenopus laevis (1)
Geobacter sulfurreducens (1)
gut metagenome (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (217)
ENA (127)
pride (89)
EGA (32)
geo (28)
MetaboLights (17)
MassIVE (12)
BioModels (8)
PanoramaPublic (4)
iProX (2)
ExpressionAtlas (1)
dbGaP (1)
EVA (1)

Tissue

Cell culture (11)
Brain (6)
T cell (6)
Early embryonic cell (3)
Epithelial cell (3)
Fibroblast (3)
B cell (2)
Cell suspension culture (2)
Colon (2)
Kidney (2)
Lung (2)
Photosynthetic cell (2)
Stem cell (2)
Testis (2)
Blood (1)
Blood plasma (1)
Blood vessel endothelial cell (1)
Bone marrow (1)
Cardiac muscle cell (1)
Cell line cell (1)
Cerebral cortex (1)
Cervical mucus (1)
Common myeloid progenitor (1)
Culture supernatant (1)
Diploid cell (1)
Embryo (1)
Embryonic stem cell (1)
Epiblast cell (1)
HEK-293T cell (1)
HeLa cell (1)

Disease

Brain cancer (3)
Disease free (3)
Colon cancer (2)
Adams-Oliver syndrome (1)
Normal (1)
Cancer (1)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Lymphoma (1)
Bladder tumour (1)
Colorectal adenocarcinoma (1)
Acute leukemia (1)
Age related macular degeneration (1)
Bone chondrosarcoma (1)
Brain meningioma (1)
Cardiomyopathy (1)
Cervix carcinoma (1)
Chronic kidney disease (1)
Leukemia (1)
Lymphoma (1)
Melanoma (1)
Meningioma (1)
Pancreatic cancer (1)
Premature birth (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (89)
Shotgun proteomics (55)
Bottom-up proteomics (14)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (11)
Gel-based experiment (9)
Mass spectrometry assay (4)
Data-independent acquisition (4)
Top-down proteomics (4)
Data-dependent acquisition (3)
SRM/MRM (3)
NMR spectroscopy (2)
SWATH MS (2)
Illumina OncoArray (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Glycoproteomics (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 2000 (4)
ScanArray 4000 [PerkinElmer] (3)
Q Exactive (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Orbitrap Fusion Lumos (2)
TripleTOF 5600 (2)
Illumina HiSeq 2000 platform (1)
FACSAria III (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
Do not apply (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
Unspecified (1)
BD Influx (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 4000 (1)
Affymetrix (1)
LTQ (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
Orbitrap Fusion (1)
TimsTOF Pro (1)

Publication Date

2012 (36)
2015 (34)
2014 (34)
2013 (34)
2011 (30)
2018 (26)
2019 (21)
2023 (20)
2010 (18)
2022 (15)
2016 (14)
2017 (14)
2008 (13)
2020 (12)
2025 (11)
2024 (11)
2021 (9)
2026 (7)
2005 (5)
2009 (4)
2007 (4)
2006 (2)

UNIPROT ID/AC

P01008 (1)
P10646 (1)
P12259 (1)
P00451 (1)
P00740 (1)
P00742 (1)
P08709 (1)
P13726 (1)
P00734 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
Q9LKL2 (1)
O81713 (1)

CHEBI ID

CHEBI:16704 (8)
CHEBI:28044 (7)
CHEBI:15428 (6)
CHEBI:17596 (6)
CHEBI:17822 (5)
CHEBI:26271 (5)
CHEBI:22660 (5)
CHEBI:18186 (5)
CHEBI:26986 (5)
CHEBI:16811 (5)
CHEBI:28300 (5)
CHEBI:17802 (5)
CHEBI:17562 (5)
CHEBI:16750 (5)
CHEBI:15729 (5)
CHEBI:16865 (5)
CHEBI:16335 (5)
CHEBI:17568 (5)
CHEBI:15891 (5)
CHEBI:29016 (5)
CHEBI:27897 (5)
CHEBI:25094 (4)
CHEBI:18237 (4)
CHEBI:22653 (4)
CHEBI:24898 (4)
CHEBI:25017 (4)
CHEBI:91005 (1)
CHEBI:64477 (1)
CHEBI:36208 (1)
CHEBI:33699 (1)

Metabolite Name

Uric acid (5)
Cytidine (5)
Uridine (5)
Inosine (5)
Acetylcarnitine (4)
Choline (4)
Cholic acid (4)
Arginine (4)
Adenosine (4)
Phenylalanine (4)
Harmalol (3)
7-methylguanosine (3)
5-methyluridine (3)
5-methylcytidine (3)
Galactonic acid (3)
N1-Methyl-2-pyridone-5-carboxamide (3)
Valine (3)
Betaine (3)
Propionylcarnitine (3)
Glucosamine (3)
N-Acetylglutamic acid (3)
1-Aminocyclopropanecarboxylic acid (3)
7-Methylguanine (3)
Kynurenic acid (3)
Kynurenine (3)
Carnitine (3)
Homocarnosine (3)
Xanthosine (3)
Deoxycholic acid (3)
Theophylline (3)

First Public Date

2014 (22)
2022 (14)
2017 (13)
2018 (12)
2024 (11)
2019 (11)
2025 (9)
2023 (9)
2020 (8)
2021 (4)
2015 (4)
2013 (4)
2026 (3)
2016 (2)
2011 (1)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (5)
Rochester Institute of Technology (4)
Department of Biology, University of Pennsylvania (3)
School of Biomedical Sciences, University of Plymouth, UK (2)
The Institute of Cancer Research (2)
1 Department of Urology, 2 Upstate Cancer Center, 3 Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Associate Professor School of Life Sciences University of Hawaii at Manoa (1)
Associate Professor, Molecular and Cellular Biology Department, University of Arizona (1)
Associate Professor, Pediatrics Adjunct Associate Professor, Microbiology and Global Health Affiliate Member: FHCRC Consortium University of Washington Seattle Childrens Research Institute 1900 9th Ave SeattleWA 98101-1304 (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (1)
BBSRC Discovery Fellow & BMC Microbiome Managing Editor Arthur Willis Environmental Research Centre University of Sheffield Sheffield S10 1AE (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR, USA (1)
Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen (1)
CRUK Beatson Institute (1)
Case Western Reserve University School of Medicine (1)
Case Western Reserve University, Department of Genetics and Genome Sciences, School of Medicine (1)
Center for Malaria Research, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802 (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Chemical Science Division (1)
College of Pharmaceutical Sciences Soochow University Yunxuan Building 1328 199 Ren'ai Road, Suzhou, Jiangsu 215123, China (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 USA (1)
Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida, 32611 (1)
Department of Molecular Biology, Princeton University, Princeton, NJ, USA (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK. (1)