Adhesion molecule

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Unknown (6944)
Transcriptomics (5383)
Genomics (642)
Proteomics (251)
Metabolomics (27)
Other (15)
Models (2)
Clinical (2)
Multiomics (1)

Organisms

Homo sapiens (2511)
Mus musculus (1839)
Rattus norvegicus (197)
Arabidopsis thaliana (93)
Drosophila melanogaster (73)
Saccharomyces cerevisiae (72)
Sus scrofa (53)
Danio rerio (48)
Bos taurus (47)
Gallus gallus (36)
Caenorhabditis elegans (24)
Canis lupus familiaris (19)
Zea mays (18)
Oryza sativa (18)
Streptococcus pneumoniae D39 (17)
Escherichia coli (16)
Macaca mulatta (16)
Schizosaccharomyces pombe (12)
Ovis aries (12)
Oryza sativa Japonica Group (12)
Candida albicans (11)
Vibrio cholerae (10)
Oncorhynchus mykiss (9)
Medicago truncatula (8)
Equus caballus (7)
Staphylococcus aureus (7)
Carassius auratus (6)
Xenopus laevis (6)
Salmo salar (6)
Glycine max (6)

Organisms

Homo sapiens (169)
Mus musculus (141)
Rattus norvegicus (15)
Danio rerio (6)
Drosophila melanogaster (5)
Mus (3)
Macaca mulatta (3)
Canis lupus familiaris (2)
Sus scrofa (2)
Bos taurus (2)
synthetic construct (2)
Streptococcus pneumoniae D39 (1)
mouse brain metagenome (1)
Aspergillus fumigatus (1)
Apis mellifera (1)
Lactobacillus acidophilus (1)
Penaeus monodon (1)
Candida albicans (1)
Mus (1)
unidentified (1)
Sus scrofa domesticus (1)

Repository

biostudies-arrayexpress (5232)
ENA (405)
geo (340)
MassIVE (95)
EGA (80)
pride (78)
jPOST (37)
MetaboLights (26)
iProX (21)
GPMDB (3)
PAXDB (3)
Cell Collective (2)
EVA (2)
MetabolomicsWorkbench (1)
NODE (1)

Tissue

Cell culture (29)
Brain (9)
Epithelial cell (7)
Permanent cell line cell (5)
Melanocyte (3)
Cerebrospinal fluid (2)
Colon (2)
Colonic cancer cell line (2)
Early embryonic cell (2)
Lung (2)
Oligodendrocyte (2)
SW-480 cell (2)
Sweat (1)
PBMC (1)
Alveolar system (1)
Anterior chamber of the eye (1)
Astrocyte (1)
Blood plasma (1)
Blood serum (1)
Blood vessel (1)
Breast (1)
Breast cell line (1)
Cerebellar neuron (1)
Colon epithelial cell (1)
Embryo (1)
Endothelial cell of hepatic sinusoid (1)
Endothelial cell of umbilical vein (1)
Extracellular vesicle (1)
Fibroblast (1)
GSC cell line (1)

Disease

Normal (20)
Breast cancer (7)
Leukemia (2)
Chronic lymphocytic leukemia (2)
Reference (2)
Glioblastoma (2)
Acute myeloid leukemia (2)
Retinoblastoma (1)
Testicular seminoma (1)
CLL (1)
Septic peritonitis (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
Responder to preoperative radiotherapy (1)
Osteosarcoma subtype fibroblastic (1)
Benign nevi (1)
High grade glioblastoma (1)
Cocaine addiction (1)
Uterine fibroid (1)
Glaucoma (1)
Primary effusion lymphoma (PEL) (1)
Monoclonal gammopathy of undetermined significance (MGUS) (1)
Ovarian carcinoma (1)
DNA damage (1)
Psoriasis vulgaris (1)
Androgen-dependent prostate cancer (1)
Acute erythroid leukemia (1)
Invasive pituitary adenoma (1)
Uninfected (1)

Technology Type

Mass Spectrometry (79)
Shotgun proteomics (41)
Bottom-up proteomics (18)
Mass spectrometry (14)
Mass spectrometry assay (8)
Affinity purification coupled with mass spectrometry proteomics (8)
Top-down proteomics (7)
Data-dependent acquisition (6)
NMR spectroscopy (4)
Gel-based experiment (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Data-independent acquisition (2)
SWATH MS (2)
Illumina Cardio-MetaboChip (1)
ION_TORRENT, Ion Torrent Proton (1)
Illumina MiSeq, ILLUMINA (1)
HiSeq X Ten, ILLUMINA (1)
Affymetrix_SNP6_raw, Illumina HT 12, Agilent ncRNA 60k (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
ESI (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Olink affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (113)
Illumina HiSeq 2500 (54)
NextSeq 500 (46)
Illumina HiSeq 4000 (32)
Illumina HiSeq 2000 (26)
NextSeq 2000 (20)
Illumina NovaSeq X (14)
NextSeq 550 (13)
Illumina MiSeq (5)
Agilent High resolution C scanner (4)
Illumina Genome Analyzer II (4)
Flow Cytometer (4)
NA (4)
Illumina HiSeq 1500 (4)
Illumina HiSeq 3000 (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
10x Genomics Chromium (3)
BD FACSAria III (3)
Affymetrix GeneChip Scanner 3000 7G (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Thermomixer (2)
MA900, Sony (2)
10x Chromium Controller (2)
BD ARIA II Cell Sorter (2)
Qiagen-Qiacube (2)
Illumina Genome Analyzer IIx (2)
TruSeq Stranded Total RNA kit (Illumina) (1)
Cellranger (1)
FACS BD Aria II & III (1)
CellRanger v2.1.0 (1)

Publication Date

2010 (773)
2015 (771)
2013 (662)
2014 (595)
2012 (547)
2011 (533)
2008 (315)
2016 (294)
2009 (229)
2007 (159)
2025 (143)
2026 (111)
2024 (99)
2022 (98)
2023 (87)
2021 (74)
2020 (68)
2019 (54)
2005 (52)
2017 (50)
2018 (48)
2006 (40)
2004 (14)
2003 (6)
2002 (3)
2001 (1)

UNIPROT ID/AC

A0A1S3CTB2_DIACI (2)
A0A1S3CTF3_DIACI (2)
A0A1S3CTU5_DIACI (2)
A0A1S3CTY3_DIACI (2)
A0A1S3CU39_DIACI (2)
A0A1S3CU82_DIACI (2)
A0A1S3CUB6_DIACI (2)
A0A1S3CUK5_DIACI (2)
A0A1S3CUN8_DIACI (2)
A0A1S3CUR6_DIACI (2)
A0A1S3CUU7_DIACI (2)
A0A1S3CV85_DIACI (2)
A0A1S3CVC6_DIACI (2)
A0A1S3CVH1_DIACI (2)
A0A1S3CVV0_DIACI (2)
A0A1S3CVX4_DIACI (2)
A0A1S3CW20_DIACI (2)
A0A1S3CW59_DIACI (2)
A0A1S3CWA9_DIACI (2)
A0A1S3CWB5_DIACI (2)
A0A1S3CWE0_DIACI (2)
A0A1S3CWG9_DIACI (2)
A0A1S3CWK8_DIACI (2)
A0A1S3CWL3_DIACI (2)
A0A1S3CWM4_DIACI (2)
A0A1S3CWQ4_DIACI (2)
A0A1S3CWX0_DIACI (2)
A0A1S3CWX4_DIACI (2)
A0A1S3CWY8_DIACI (2)
A0A1S3CX04_DIACI (2)

CHEBI ID

CHEBI:17154 (6)
CHEBI:16811 (5)
CHEBI:16708 (5)
CHEBI:25017 (5)
CHEBI:15428 (5)
CHEBI:16335 (5)
CHEBI:7916 (5)
CHEBI:16704 (5)
CHEBI:16919 (5)
CHEBI:17596 (5)
CHEBI:17724 (4)
CHEBI:24898 (4)
CHEBI:15741 (4)
CHEBI:27266 (4)
CHEBI:17750 (4)
CHEBI:16015 (4)
CHEBI:18012 (4)
CHEBI:16027 (4)
CHEBI:16737 (4)
CHEBI:30769 (4)
CHEBI:17768 (3)
CHEBI:30831 (3)
CHEBI:35704 (3)
CHEBI:17200 (3)
CHEBI:50129 (3)
CHEBI:26271 (3)
CHEBI:49033 (3)
CHEBI:25094 (3)
CHEBI:17126 (3)
CHEBI:30751 (3)

Metabolite Name

Inosine (8)
Pantothenic acid (7)
Uridine (7)
Creatine (7)
Hypoxanthine (7)
Methionine (6)
Choline (6)
Adenosine (6)
Guanine (6)
Adenine (6)
Guanosine (6)
Valine (5)
Betaine (5)
Spermine (5)
Acetylcholine (5)
Citric acid (5)
Histamine (5)
Thymidine (5)
Creatinine (5)
25-Hydroxycholesterol (4)
Leucine (4)
Corticosterone (4)
Citrulline (4)
Ornithine (4)
Succinic acid (4)
Palmitoylcarnitine (4)
Dibutyl phthalate (4)
Octadecylamine (4)
Spermidine (4)
Cytosine (4)

First Public Date

2014 (80)
2025 (55)
2026 (48)
2024 (46)
2022 (33)
2023 (31)
2021 (29)
2020 (20)
2015 (17)
2019 (16)
2016 (12)
2018 (8)
2017 (8)
2013 (2)

Classification

fungi (2)
bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)

Study status

Active, not recruiting (1)
Recruiting (1)

Study type

Transcription profiling by array (3678)
RNA-seq of coding RNA (642)
Unknown experiment type (147)
RNA-seq of non coding RNA (104)
ChIP-seq (101)
RNA-seq of coding RNA from single cells (95)
Methylation profiling by array (61)
Other (57)
Comparative genomic hybridization by array (55)
ChIP-chip by tiling array (46)
Transcription profiling by SAGE (37)
Transcription profiling by RT-PCR (31)
Proteomic profiling by array (18)
Methylation profiling by high throughput sequencing (18)
RNA-seq of total RNA (18)
Transcription profiling by tiling array (16)
Animal - High-throughput sequencing (12)
ATAC-seq (10)
DNA-seq (9)
RNAi profiling by array (8)
Genotyping by array (7)
Cell line - High-throughput sequencing (6)
ChIP-chip by array (6)
Human - Single-cell sequencing (5)
Animal - One-color microarray (4)
Differential (3)
Animal - Single-cell sequencing (3)
MicroRNA profiling by high throughput sequencing (3)
MicroRNA profiling by array (3)
Transcription profiling by MPSS (2)

Release Date

2015 (1090)
2010 (905)
2014 (879)
2013 (865)
2011 (750)
2012 (740)
2022 (716)
2016 (642)
2021 (609)
2020 (550)
2023 (541)
2019 (527)
2025 (508)
2024 (466)
2018 (462)
2017 (452)
2008 (407)
2009 (355)
2007 (228)
2026 (109)
2006 (104)
2005 (87)
2004 (43)
2002 (33)
2003 (30)
1999 (22)
2001 (18)
1998 (18)
2000 (14)
1997 (5)

Lab affiliation

Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (2)
Amherst College (1)
Arkana Laboratories, Little Rock, Arkansas, USA (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Biomedical Center Munich Cardiovascular Physiology and Pathophysiology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
B’ Pathology Clinic, Hippokrateion Hospital, National and Kapodestrian University of Athens. (1)
CNRS, Inserm, Nantes Université, Univ Angers, CRIC2NA, Nantes, France (1)
Cambridge Institute of Therapeutic Immunology and Infectious Diseases, Department of Medicine, University of Cambridge, (1)
Cancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA, USA (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany (1)
Department of Biochemistry and Chemistry, Centre for Cardiovascular Biology and Disease Research, La Trobe Institute for Molecular Science, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, Victoria 3086, Australia (1)
Department of Biochemistry and Molecular Biology, Oklahoma Center for Respiratory and Infectious Diseases, Oklahoma State University, Stillwater, Oklahoma, USA (1)
Department of Chemistry, University of Washington, Seattle, WA (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)
Department of Laboratory Medicine, Institute of Biomedicine, University of Gothenburg, Sweden. Laboratory of Clinical Chemistry, Sahlgrenska University Hospital, Gothenburg, Sweden (1)
Department of Life Science, National Taiwan University (1)
Department of Life Sciences, Korea University, Seoul 02841, Korea (1)
Department of Neurobiology and Behavior, University of California, Irvine (1)
Department of Neuroscience Baylor College of Medicine Houston, TX US (1)
Dept of pathology, Vision research foundation, Chennai, India (1)
Dept. Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Munich, Germany (1)

Location

Denmark (1)
China (1)
Spain (1)
United States (1)
France (1)

Keyword

Obinutuzumab (1)
Atezolizumab (1)

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Ethanol exposure disrupts extraembryonic microtubule cytoskeleton and embryonic blastomere cell adhesion, producing epiboly and gastrulation defects

Gene expression was measured using microarrays in 8 hour postfertilization embryos, comparing control versus ethanol-treated (2 to 8 hours postfertilization) embryos. This experiment was performed to determine the gene expression changes that occur in response to ethanol treatment as a model of feta...

ORGANISM(S): Danio rerio

2014-07-09 | E-GEOD-48380 | biostudies-arrayexpress

Activated leukocyte cell adhesion molecule on human oligodendrocytes mediates Th17 cell adhesion

PRJNA962726 | ENA

Periostin, a cell adhesion molecule, facilitates invasion in the tumor microenvironment and annotates a novel tumor invasive signature in esophageal cancer

Human squamous cell cancers are the most common epithelially derived malignancies. One example is esophageal squamous cell carcinoma (ESCC), which is associated with a high mortality rate that is related to a propensity for invasion and metastasis. We report that periostin, a highly expressed cell a...

ORGANISM(S): Homo sapiens

2010-07-08 | E-GEOD-21293 | biostudies-arrayexpress

Analysis of extracellular matrix and adhesion molecules expression in ALL cell line

The acute lymphoblastic leukemia cells lines JM-1, REH, Nalm-27, and SUP-B15 were analyzed for baseline expression of extacellular matrix and adhesion molecules using a pathway focused cDNA microarray (SABiosciences). RNA isolated from the ALL cell lines JM-1, REH, Nalm-27, and SUP-B15 was analyzed ...

ORGANISM(S): Homo sapiens

2010-05-01 | E-GEOD-18516 | biostudies-arrayexpress

Intercellular Adhesion Molecule 1-Positive Dental Pulp Stem Cells

PRJNA1189017 | ENA

Inhibition of adhesion molecule gene expression and cell adhesion by the metabolic regulator PGC-1alpha

PRJNA320774 | ENA

Early Dysregulation of Cell Adhesion and Extracellular Matrix Pathways in Breast Cancer Progression

Proliferative breast lesions, such as simple ductal hyperplasia (SH) and atypical ductal hyperplasia (ADH), are candidate precursors to ductal carcinoma in situ (DCIS) and invasive cancer. To better understand their relationship to more advanced disease, we used microdissection and DNA microarrays t...

ORGANISM(S): Homo sapiens

2009-09-08 | E-GEOD-16873 | biostudies-arrayexpress

Knockdown of the psychosis susceptibility gene ZNF804A alters expression of genes involved in cell adhesion

Genome-wide association studies have convincingly implicated several novel genes in susceptibility to schizophrenia and bipolar disorder. The first genome-wide significant association with the broad phenotype of psychosis was with a polymorphism in the ZNF804A gene. However, the biological function(...

ORGANISM(S): Homo sapiens

2011-11-16 | E-GEOD-28725 | biostudies-arrayexpress

Chronic high glucose condition reduced expressions of intercellular adhesion molecules and increased intercellular hyperpermeability in periodontal epithelium.

There is a close relationship between hyperglycemia in diabetes and progression of periodontal disease. This study aims to investigate the effect of hyperglycemia on the barrier function of gingival epithelial cells as a cause of hyperglycemia-exacerbated periodontitis in diabetes mellitus. Abnormal...

ORGANISM(S): Mus Musculus (mouse)

2023-07-29 | PXD035613 | JPOST Repository

Transcription profiling of mouse testis from Tslc1-/- knockouts

TSLC1/IGSF4, an immunoglobulin superfamily molecule, is predominantly expressed in the brain, lung, and testis and plays important roles in epithelial cell adhesion, cancer invasion, and synapse formation. We generated Tslc1/Igsf4-deficient mice by disrupting exon 1 of the gene and found that Tslc1...

ORGANISM(S): Mus musculus

2008-06-12 | E-GEOD-3676 | biostudies-arrayexpress

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