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ProteomicsUnified Feature Association Networks through Integration of Transcriptomic and Proteomic Data
Proteomic data from dengue virus infected U-937 cells. PVD_C samples were infected via antibody-mediated or DC-SIGN receptor mediated entry routes with wild-type DENV-4 or mock inoculum; time points 2, 8, 16, and 24 hours; 5 biological replicates. PVD_L samples were infected via antibody-mediated or...
ORGANISM(S): Homo sapiens (Human) Dengue virus 
2019-08-22 | PXD014780 | Pride
Virus entry route U-937 cells Dengue virus 
MetabolomicsSalmonella Modulates Metabolism during Growth under Conditions that Induce Expression of Virulence Genes
Salmonella enterica serovar Typhimurium (S. Typhimurium) is a facultative pathogen that uses complex mechanisms to invade and proliferate within mammalian host cells. To investigate possible contributions of metabolic processes to virulence in S. Typhimurium grown under conditions known to induce ex...
2013-05-02 | MTBLS35 | MetaboLights
MetabolomicsModel-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation
Macrophages are central players in immune response, manifesting divergent phenotypes to control inflammation and innate immunity through release of cytokines and other signaling factors. Recently, the focus on metabolism has been reemphasized as critical signaling and regulatory pathways of human pa...
2012-09-05 | MTBLS23 | MetaboLights
ProteomicsComprehensive protein profiling reveals pleiotropic effects of Bemisia tabaci and Tomato Mottle Virus infection on local and systemic tomato leaves
Tomato seeds (S. lycopersicum ‘Fl Lanai’) were germinated under greenhouse conditions maintained at 24°C-29°C in flat trays (BWI Apopka, Catalog Number GPPF72S7X) filled with Sungro Horticulture soil (Metro-mix 830, BWI Apopka, Cat# TX830). Two weeks post emergence seedlings were transplanted to 4” ...
ORGANISM(S): Tomato mottle virus Solanum lycopersicum 
2020-10-02 | PXD019197 | Pride
Whitefly Tomov Bemisia tabaci Tomato Tomato mottle virus 
ProteomicsModeling of microbial and viral community dynamics in Pseudoalteromonas sp. 13-15
Predictive modeling of wild microbial and viral community dynamics in Pseudoalteromonas sp. 13-15, evaluation using two viral systems under phosphate presence and absence conditions.
ORGANISM(S): Pseudoalteromonas (ncbitaxon:53246) 
2019-03-23 | MSV000083626 | MassIVE
ModelsThiele2011 - Genome-scale metabolic network of Salmonella Typhimurium (STM_v1_0)
Thiele2011 - Genome-scale metabolic network of Salmonella Typhimurium (STM_v1_0) This model is described in the article: A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. Thiele I, Hyduke DR, Steeb B, Fankam ...
2015-07-30 | MODEL1507180017 | BioModels
ProteomicsS.enterica - Whole organism, SC (Adkins,mcp,2006)
abundance based on Spectral counting, Interaction consistency score: 11.4, Coverage: 56
ORGANISM(S): 99287 
2006-00-00 | 2856723965 | PAXDB
OtherA Comprehensive Subcellular Proteomic Survey of Salmonella Grown under Phagosome-Mimicking versus Standard Laboratory Conditions.
Data from PeptideAtlas, [[http://www.peptideatlas.org/PASS/PASS00551 PASS00551]]. File: SBEP_STM_subcell-53c_14Jan11_Doc_10-09-53.mzml. Published as part of . From the Abstract: {{i}} Towards developing a systems-level pathobiological understanding of Salmonella enterica, we performed a subcellular...
ORGANISM(S): Salmonella_phage_c341_uid39795,salmonella_phage_e1_uid29079,salmonella_phage_epsilon34_uid33779,salmonella_phage_fels_1_uid29267,salmonella_phage_phisg_jl2_uid30063,salmonella_phage_se1_uid33483,salmonella_phage_setp3_uid19157,salmonella_phage_st64b_uid14228, Salmonella_enterica_serovar_typhimurium_14028s 
GPM32310003265 | GPMDB
TranscriptomicsTranscriptome analysis of Thermotoga maritima under multiple growth conditions [tiling array]
Investigation of transcripts (boundary, level, etc.) across the entire T. maritima genome in mulitple growth conditions, including logphase, late exponential, heat shock and hydrogen inhibited conditions. The new genome annotation has been approved by Genbank [CP004077, pending release of the manus...
ORGANISM(S): Thermotoga maritima MSB8 
2013-08-02 | E-GEOD-37391 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Thermotoga maritima
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Thermotoga maritima MSB8 
2013-08-02 | E-GEOD-37483 | biostudies-arrayexpress
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