Ag - OmicsDI

Show results for

Unknown (48832)
Transcriptomics (3281)
Genomics (1861)
Proteomics (1324)
Metabolomics (196)
Other (17)
Models (13)
Clinical (11)
Genomic (10)
Methylation profiling (9)
Multiomics (3)

Organisms

Homo sapiens (1366)
Mus musculus (916)
Arabidopsis thaliana (171)
Rattus norvegicus (107)
Saccharomyces cerevisiae (94)
Drosophila melanogaster (86)
Schizosaccharomyces pombe (45)
Danio rerio (43)
Caenorhabditis elegans (38)
Sus scrofa (37)
Rhizobium leguminosarum (29)
Streptococcus pneumoniae D39 (28)
Escherichia coli (27)
Mycobacterium tuberculosis (26)
Bos taurus (17)
Gallus gallus (16)
Zea mays (12)
Oryza sativa (12)
Apis mellifera (11)
Geobacter sulfurreducens (11)
Candida albicans (11)
Oncorhynchus nerka (10)
Dictyostelium discoideum (10)
Streptococcus pneumoniae (10)
Hordeum vulgare (10)
Bacillus amyloliquefaciens (9)
Solanum lycopersicum (8)
Medicago truncatula (8)
Carassius auratus (7)
Mammalia (1)

Organisms

Homo sapiens (330)
Mus musculus (323)
Arabidopsis thaliana (35)
Rattus norvegicus (29)
Dictyostelium discoideum (15)
Danio rerio (13)
Rhizoctonia solani AG-1 IA (10)
Synechocystis sp. PCC 6803 (9)
Sus scrofa (9)
Rhizoctonia solani (8)
Schizosaccharomyces pombe (8)
soil metagenome (8)
SAR86 cluster bacterium (6)
Saccharomyces cerevisiae (6)
Escherichia coli (6)
Flavobacteriales bacterium (5)
bacterium (5)
Cytophagales bacterium (5)
Zymoseptoria tritici (5)
Oryza sativa (5)
mouse gut metagenome (5)
Verrucomicrobiota bacterium (4)
Plasmodium falciparum 3D7 (4)
Campylobacter jejuni (4)
Caenorhabditis elegans (4)
Rhizoctonia solani AG-3 Rhs1AP (3)
Pseudomonadales bacterium (3)
Reticulascus tulasneorum (3)
Linnemannia elongata AG-77 (3)
Vibrio cholerae C6706 (3)

Repository

biostudies-arrayexpress (3259)
ENA (1548)
pride (1097)
geo (235)
MetaboLights (133)
EGA (132)
MassIVE (121)
MetabolomicsWorkbench (57)
PeptideAtlas (33)
iProX (26)
jPOST (26)
BioModels (13)
PanoramaPublic (11)
dbGaP (10)
GPMDB (8)
GNPS (6)
PAXDB (5)
NODE (3)
EVA (1)
LINCS (1)

Tissue

Cell culture (223)
Brain (64)
Epithelial cell (64)
Blood plasma (39)
Liver (37)
Blood (30)
Digestive System (27)
Plant cell (25)
Fibroblast (24)
Permanent cell line cell (23)
Blood (23)
Cell suspension culture (22)
Pancreas (7)
Brain (5)
Lung (4)
Feces (4)
Liver (3)
Adipose tissue (2)
Heart (2)
Cecum (2)
Hepatopancreas (1)
Scalp (1)
Corpus Luteum (1)
Arteries (1)
Muscle (1)
Cultured cells (1)
Urine (1)
Female Reproductive System (1)
Ovary (1)
Others (1)

Disease

Normal (18)
Colon cancer (10)
Alzheimer's disease (9)
Neuroblastoma (4)
Multiple sclerosis (4)
Amyotrophic lateral sclerosis (3)
Hyperglycaemic (2)
Prostate carcinoma (2)
Breast Normal (1)
Large cell neuroendocrine carcinoma (1)
ER positive breast cancer (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
T. circumcincta infection (1)
Primary medulloblastoma (1)
Not applicable (1)
Myeloid neoplasm (1)
Phyllodes tumor (1)
Low-stage neuroblastoma (1)
Colon cancer Dukes C (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Post-stasis (1)
Advanced atherosclerosis (1)
Chronic gastritis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Hypertension (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
Insulin resistance (1)
Carotid artery disease: ASYMPTOMATIC high-grade inner carotid artery stenosis (1)
Pancreatic ductal adenocarcinoma (1)
Colon Cancer (1)

Technology Type

Mass Spectrometry (1154)
Shotgun proteomics (541)
Bottom-up proteomics (176)
Data-independent acquisition (134)
SWATH MS (130)
Mass spectrometry (104)
Affinity purification coupled with mass spectrometry proteomics (90)
Gel-based experiment (83)
Data-dependent acquisition (81)
ESI (52)
Top-down proteomics (30)
SRM/MRM (24)
Mass spectrometry assay (22)
Chemical cross-linking coupled with mass spectrometry proteomics (19)
All-ion fragmentation (17)
DiaPASEF (15)
NMR spectroscopy (9)
EI (9)
HDMSE (9)
MSE (5)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500, ILLUMINA (2)
Unspecified (2)
Illumina MiSeq, ILLUMINA (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500 (1)
KINOMEscan (1)
Fluorescence intensity (1)
NMR spectroscopy assay (1)

Instrument Platform

NextSeq 500 (83)
Illumina HiSeq 2500 (68)
Illumina NovaSeq 6000 (59)
Illumina HiSeq 2000 (47)
Illumina HiSeq 4000 (42)
Illumina MiSeq (22)
Axon GenePix 4000B scanning hardware (11)
Illumina Genome Analyzer II (10)
NextSeq 550 (10)
G2565AA DNA microarray scanner [Agilent] (7)
Scanning hardware (7)
ScanArray 5000 [PerkinElmer] (6)
GenePix 4000B [Axon Instruments] (6)
NextSeq 2000 (6)
Illumina Genome Analyzer (5)
Axon- GenePix4000B (5)
Vortex (5)
BGISEQ-500 (5)
Illumina HiSeq 3000 (5)
Helicos HeliScope (4)
GenePix Professional 4200A [Axon Instruments] (4)
Illumina Genome Analyzer IIx (4)
G2565BA DNA microarray scanner [Agilent] (4)
DNBSEQ-G400 (4)
MinION (4)
Illumina HiSeq 1500 (4)
- (4)
Affymetrix GeneChip Scanner 3000 7G (3)
BAS-5000 [FUJIFILM] (3)
Illumina NovaSeq X (3)

Publication Date

2010 (425)
2013 (411)
2014 (379)
2015 (362)
2012 (326)
2011 (305)
2025 (257)
2021 (250)
2022 (237)
2016 (214)
2024 (206)
2008 (200)
2023 (199)
2026 (187)
2020 (179)
2009 (168)
2019 (140)
2017 (119)
2018 (112)
2007 (108)
2006 (55)
2005 (55)
2004 (42)
2003 (8)
2002 (1)
2027 (1)

UNIPROT ID/AC

P06213 (3)
Q8CA95 (2)
P62137 (2)
Q9ERT9 (2)
P49615 (2)
Q6P1F6 (2)
P63330 (2)
Q60829 (2)
P63328 (2)
P48453 (2)
Q63810 (2)
Q63811 (2)
P48455 (2)
Q9DBC7 (2)
P12849 (2)
P68181 (2)
Q01063 (2)
P62204 (2)
P84309 (2)
P63213 (2)
P62874 (2)
B2RSH2 (2)
P05132 (2)
Q76MZ3 (2)
P49815 (2)
Q92574 (2)
P23443 (2)
Q96B36 (2)
P42345 (2)
P35568 (2)

ENSEMBL ID

ENSG00000170477 (30)
ENSG00000229353 (18)
ENSG00000147251 (7)
ENSG00000204131 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000021039 (2)
ENSMUSP00000141097 (2)
ENSMUSG00000098557 (2)
ENSG00000247315 (2)
ENSMUSG00000103290 (1)
ENSMUSG00000096326 (1)
ENSMUSG00000095753 (1)
ENSMUSG00000095416 (1)
ENSMUSG00000094689 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076508 (1)
ENSMUSG00000098814 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094546 (1)

CHEBI ID

CHEBI:16335 (24)
CHEBI:16027 (16)
CHEBI:18243 (3)
CHEBI:17489 (3)
CHEBI:29108 (3)
CHEBI:15996 (3)
CHEBI:17552 (3)
CHEBI:15422 (3)
CHEBI:65172 (1)
CHEBI:68579 (1)
CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)

Metabolite Name

Uridine (15)
Succinic acid (14)
Citric acid (14)
Glycine (13)
Uracil (13)
Creatine (13)
Taurine (13)
Xanthine (13)
Adenosine (12)
Hypoxanthine (12)
Glycine (12)
Uric acid (12)
Pantothenic acid (11)
Tryptophan (11)
L-Phenylalanine (11)
Inosine (11)
Allantoin (10)
L-Tyrosine (10)
Methionine (10)
Valine (10)
Threonine (10)
Proline (10)
Phenylalanine (10)
Lysine (10)
Leucine (10)
Threonine (10)
Adenine (10)
Glucose (10)
Threonic acid (9)
Valine (9)

First Public Date

2023 (207)
2014 (183)
2024 (159)
2025 (146)
2017 (130)
2026 (121)
2019 (113)
2022 (98)
2020 (91)
2021 (87)
2018 (65)
2015 (54)
2013 (47)
2016 (45)
2012 (1)
2011 (1)

Modelling Approach

Ordinary differential equation model (11)
Constraint-based model (1)

Study status

Completed (6)
Recruiting (4)
Active, not recruiting (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (27)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (12)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (11)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (9)
Department of Biological Sciences, University of Alberta (9)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (8)
Biognosys AG (8)
Proteome Research (AG Stühler) Institute of Molecular Medicine Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf Germany (7)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
Vanderbilt University Proteomics Core (5)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (4)
Max Planck Unit for the Science of Pathogens Charitéplatz 1 | D-10117 Berlin | Germany (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Protein Analysis Unit ZfP LMU Munich BioMedical Center Grosshaderner Strasse 9 82152 Planegg-Martinsried Tel. +49 89 2180 71804 (4)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (4)
Institute of Microbiology - BioCeV, Academy of Sciences of the Czech Republic (4)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg (4)
Institute of Biochemistry (IBC, ETHZ) (3)
Department of Medicinal Chemistry, University of Washington (3)
University at buffalo, SUNY (3)
IBCII, Goethe University Frankfurt, Germany, Medical School (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (3)
Fred Hutchinson Cancer Research Center (3)
University of Freiburg, Institute of Biology II, Biochemistry and Functional Proteomics (3)
Proteome Research (AG Stühler) Institute of Molecular Medicine I Heinrich Heine University Düsseldorf Germany (3)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
German Cancer Research Center (DKFZ) (3)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (3)

Keyword

Axitinib (2)
Bevacizumab (2)
GI neoplasms (phase 1) (1)
Gastroscopy (1)
Acido Folinico (1)
Septin 9 (1)
SEPT9 (1)
Methylation (1)
FOBT (1)
FIT (1)
Artificial intelligence (1)
Adenoma (1)
Colonoscopy (1)
Screening (1)
CRC (1)
Capecitabine (1)
Irinotecan (1)
Gadolinium 1,4,7,10-tetraazacyclododecane-N,N',N'',N'''-tetraacetate (1)
ProHance (1)
Gadovist (1)
MultiHance (1)
DOTAREM® (gadoterate meglumine) Injection for intravenous use (1)
Primovist (1)
Motor function assessment (1)
Cognitive function assessment (1)
Magnetic Resonance Imaging (MRI) (1)
Gadolinium (1)
Gadolinium-based contrast agent (GBCA) (1)
Gadolinium retention (1)
Neuroendocrine tumor (1)

IsPrivate

False (13)

Submitter Keywords

FROG (1)

Classification

bacteria (44)
protozoa (20)
fungi (4)
viruses (1)

Modification

15.994915 (4)
2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
57.021464 (4)
N6 (3)
N6-dimethyl-L-lysine (3)
Not available (3)
0.984016 (2)
4 (1)

Study type

Transcription profiling by array (2110)
RNA-seq of coding RNA (462)
ChIP-seq (96)
RNA-seq of non coding RNA (73)
Other (59)
Comparative genomic hybridization by array (49)
Methylation profiling by high throughput sequencing (36)
Unknown experiment type (34)
RNA-seq of coding RNA from single cells (33)
ChIP-chip by array (31)
Methylation profiling by array (29)
RNA-seq of total RNA (22)
ChIP-chip by tiling array (21)
Cell line - High-throughput sequencing (21)
Transcription profiling by tiling array (20)
DNA-seq (17)
Animal - High-throughput sequencing (15)
MicroRNA profiling by array (12)
MicroRNA profiling by high throughput sequencing (10)
Transcription profiling by RT-PCR (9)
High-throughput sequencing (8)
Genotyping by array (8)
Proteomic profiling by array (7)
Human - High-throughput sequencing (5)
ATAC-seq (5)
RIP-seq (5)
Transcription profiling by SAGE (4)
Animal - One-color microarray (4)
Spatial transcriptomics by high-throughput sequencing (4)
Differential (3)

Release Date

2022 (5665)
2021 (5011)
2023 (4972)
2025 (4506)
2020 (4023)
2024 (3983)
2019 (3235)
2018 (2977)
2017 (2521)
2016 (2420)
2015 (2323)
2014 (1894)
2013 (1594)
2012 (1298)
2011 (1196)
2010 (1133)
2009 (737)
2026 (694)
2008 (561)
2007 (368)
2006 (258)
2005 (200)
2004 (135)
2003 (103)
2002 (72)
2001 (58)
2000 (52)
1998 (41)
1999 (39)
1997 (14)

Location

India (3)
China (3)
Italy (3)
United States (3)
Hong Kong (2)
Canada (2)
France (2)
South Korea (2)
Japan (2)
Thailand (1)
Singapore (1)
Poland (1)
Russia (1)
Brazil (1)
Austria (1)
Germany (1)
Switzerland (1)
Netherlands (1)
Spain (1)
Czechia (1)
Belgium (1)

Previous page
1 / 5557
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 5557
Next page

Sort by:

Relevance

Page size

Umbelopsis ramanniana AG strain:AG

Umbelopsis ramanniana AG transcriptome

PRJNA373021 | ENA

Linnemannia elongata AG-77

Mortierella elongata AG-77 transcriptome

PRJNA459543 | ENA

Umbelopsis ramanniana AG strain:AG

Umbelopsis ramanniana AG strain:AG Genome sequencing and assembly

PRJNA196032 | ENA

Oceanobacillus sp. AG strain:AG

Oceanobacillus sp. AG strain:AG Genome sequencing and assembly

PRJNA592772 | ENA

Multiomics assessment in Enchytraeus crypticus exposed to Ag (nano)materials (Ag NM300K and AgNO 3 )

Silver nanomaterials (AgNMs) are broadly used in many products and also rate among the most studied nanoscaled materials. Their ecotoxicological impact in soil invertebrates has been covered, mostly using standard testing, where endpoints like survival and reproduction are assessed. The underlying m...

ORGANISM(S): Enchytraeus crypticus

2021-09-10 | PXD024444 | Pride

Mesotoga prima MesG1.Ag.4.2

Thermotogales bacterium mesG1.Ag.4.2 genome sequencing project

PRJNA48995 | ENA

Rhizoctonia solani AG-3

Rhizoctonia solani AG-3 Raw sequence reads

PRJNA853492 | ENA

Basidiobolus ranarum strain:AG-B5

Basidiobolus ranarum AG-B5 Transcriptome - BranB5

PRJNA713267 | ENA

mRNA expression data from AG-haESC, E14 and MEF

Haploid cells are amenable for genetic analysis because they contain only one set of chromosomes.Here,we report the derivation of haESCs from androgenetic blastocysts. These cells, which we designated AG-haESCs, express classical ESC markers, are pluripotent, and contribute to various tissues includ...

ORGANISM(S): Mus musculus

2012-04-26 | E-GEOD-35785 | biostudies-arrayexpress

Basidiobolus ranarum strain:AG-B5

Basidiobolus ranarum AG-B5 Genome sequencing and assembly

PRJNA759578 | ENA

Previous page
1 / 5557
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 5557
Next page

Sort by:

Relevance

Page size

55568 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Study status

Lab affiliation

Tags

Keyword

IsPrivate

Submitter Keywords

Classification

Modification

Study type

Release Date

Location

OmicsDI is part of the ELIXIR infrastructure

Tweets