Ahmed D D - OmicsDI

Show results for

Unknown (3942)
Transcriptomics (136)
Genomics (70)
Proteomics (66)
Metabolomics (13)
Models (3)

Organisms

Homo sapiens (155)
Mus musculus (49)
Arabidopsis thaliana (21)
Caenorhabditis elegans (3)
Rattus norvegicus (3)
Gallus gallus (3)
Haemophilus influenzae (2)
Sus scrofa (2)
Bacillus subtilis (2)
Danio rerio (2)
Xenopus tropicalis (2)
Escherichia coli (1)
Severe acute respiratory syndrome-related coronavirus (1)
Arabidopsis lyrata subsp. lyrata (1)
Francisella tularensis subsp. novicida (1)
Plasmodium yoelii (1)
Oryza sativa (1)
Ovis aries (1)
Triticum aestivum (1)
Drosophila melanogaster (1)
cellular organisms (1)
Bacillus sp. B-23280 (1)
Bos taurus (1)
Dineutus assimilis (1)
Dineutus ciliatus (1)
Dineutus discolor (1)
Dineutus hornii (1)
Dineutus nigrior (1)
Drosophila americana (1)
Drosophila novamexicana (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (148)
EGA (57)
pride (43)
MassIVE (16)
MetaboLights (13)
PanoramaPublic (5)
BioModels (3)
iProX (1)
jPOST (1)
ENA (1)

Tissue

Cell culture (10)
B cell (5)
Brain (4)
Primary cell (4)
Whole body (4)
Fibroblast (3)
Blood (2)
Blood cell (2)
Kidney (2)
Liver (2)
Pancreas (2)
Permanent cell line cell (2)
Skin (2)
Bile (1)
Bile duct (1)
Blood plasma (1)
Blood serum (1)
Blood-lymph (1)
Bone marrow (1)
Bursa copulatrix (1)
Cell suspension culture (1)
Cerebral cortex (1)
Colon (1)
Corneal endothelial cell (1)
Dendritic cell (1)
Diploid cell (1)
Early embryonic cell (1)
Embryo (1)
Epithelial cell (1)
Extraembryonic membrane (1)

Disease

Acute leukemia (5)
Brain cancer (3)
Normal (2)
Disease free (2)
Lymphoma (2)
Benign glioma (1)
Cocaine addiction (1)
Hepatocellular carcinoma (1)
Midgut carcinoid liver metastasis (1)
Prostate cancer (1)
Cancer (1)
Cervix carcinoma (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Lung adenocarcinoma (1)
Lung cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Melanoma (1)
Neuroblastoma (1)
Neurological dysfunction (1)
Osteosarcoma (1)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (1)
Peripheral primitive neuroectodermal tumor (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (17)
Mass spectrometry (10)
Bottom-up proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (7)
Gel-based experiment (5)
Data-independent acquisition (4)
Mass spectrometry assay (3)
SWATH MS (3)
Top-down proteomics (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
OXFORD_NANOPORE, MinION (1)
NMR spectroscopy assay (1)
All-ion fragmentation (1)
Data-dependent acquisition (1)
Immunopeptidomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (5)
Illumina HiSeq 4000 (4)
Orbitrap Fusion Lumos (4)
Q Exactive (4)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - hilic (3)
Microcentrifuge (2)
ScanArray scanning hardware (2)
Ion Torrent S5 XL (2)
Orbitrap Fusion (2)
Axon Instruments GenePix 4000B scanner (1)
Perkin Elmer, USA (1)
Agilent Technologies Microarray Scanner (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
6140 Quadrupole LC/MS (1)
6530C Q-TOF LC/MS (Agilent instrument model) (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Velos Pro (1)
MALDI Synapt G2-S HDMS (1)
Orbitrap Fusion ETD (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TripleTOF 5600+ (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)

Publication Date

2011 (29)
2013 (22)
2024 (20)
2014 (19)
2012 (19)
2022 (14)
2015 (14)
2010 (13)
2020 (12)
2016 (12)
2026 (8)
2023 (8)
2021 (7)
2025 (6)
2018 (5)
2008 (5)
2017 (4)
2007 (3)
2006 (3)
2019 (2)
2009 (2)

CHEBI ID

CHEBI:18237 (7)
CHEBI:28044 (7)
CHEBI:29016 (7)
CHEBI:16811 (6)
CHEBI:22660 (6)
CHEBI:27570 (6)
CHEBI:28300 (6)
CHEBI:30769 (6)
CHEBI:15354 (5)
CHEBI:16235 (5)
CHEBI:16450 (5)
CHEBI:16708 (5)
CHEBI:16742 (5)
CHEBI:17568 (5)
CHEBI:17750 (5)
CHEBI:17775 (5)
CHEBI:17822 (5)
CHEBI:18186 (5)
CHEBI:22653 (5)
CHEBI:24898 (5)
CHEBI:25017 (5)
CHEBI:25094 (5)
CHEBI:26271 (5)
CHEBI:27266 (5)
CHEBI:30915 (5)
CHEBI:15351 (4)
CHEBI:15356 (4)
CHEBI:15428 (4)
CHEBI:28445 (1)
CHEBI:71417 (1)

Metabolite Name

AMP (3)
Adenine (3)
Alanine (3)
Allantoin (3)
Arginine (3)
Aspartate (3)
CMP (3)
Citric acid (3)
Citrulline (3)
Cysteine (3)
Fumarate (3)
Glutamate (3)
Glutamine (3)
Glycerate (3)
Glycine (3)
Guanine (3)
Histidine (3)
Hypoxanthine (3)
Isoleucine (3)
Lactate (3)
Leucine (3)
Lysine (3)
Methionine (3)
Methionine (3)
Myo-inositol (3)
Orotate (3)
Phenylalanine (3)
Proline (3)
Succinate (3)
Taurine (3)

IsPrivate

False (3)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)

First Public Date

2017 (1)

Modelling Approach

Computational model (2)
Ordinary differential equation model (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
42.010565 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (81)
ChIP-chip by tiling array (22)
RNA-seq of coding RNA (16)
ChIP-seq (6)
Methylation profiling by high throughput sequencing (6)
Methylation profiling by array (5)
Unknown experiment type (2)
Cell line - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
Other (2)
RNA-seq of non coding RNA (2)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (549)
2025 (542)
2021 (486)
2023 (481)
2024 (457)
2020 (298)
2019 (225)
2018 (213)
2017 (138)
2015 (127)
2016 (124)
2014 (91)
2026 (84)
2011 (63)
2013 (59)
2012 (52)
2010 (37)
2009 (19)
2008 (17)
2007 (11)
2006 (8)
2005 (2)
2004 (2)
2002 (2)
2001 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Max Planck Unit for the Science of Pathogens Charitéplatz 1,D-10117 Berlin, Germany (2)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
Boston Children's Hospital (1)
CRCM, INSERM, CNRS, Institut Paoli-Calmette, Aix-Marseille University, 27 Boulevard Leï Roure, 13009, Marseille, France (1)
CRCM, INSERM, CNRS, Institut Paoli-Calmettes, Aix-Marseille Univ. , 27 Boulevard Leï Roure, 13009, Marseille, France (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Cell Biology, Gygi Lab, Harvard medical School, Boston, MA (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (1)
Department of Biology, Institute of Molecular Systems iiology, ETH Zürich, Switzerland (1)
Department of Biology, Syracuse University, Syracuse NY, 13244, USA (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Laboratory Medicine, UCSF (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, CA, USA (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, Monrovia, CA, USA (1)
Department of cellular and Molecular Medicine, Universityof Ottawa, Ottawa, Ontario, Canada (1)
Division of Biological and Biomedical Sciences, College of Health and Life Sciences, Hamad Bin Khalifa University, Education City, Qatar Foundation, Doha, Qatar (1)
Functional Proteomics, ICR (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 France (1)
Joint Proteomics Facility (1)
Karolinska Institutet (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)
Lab Head, UQ Diamantina Institute,The University of Queensland (1)
Laboratory of Plant Molecular Physiology, Centre of Biotechnology of Borj Cedria, P.O. Box 901, 2050 Hammam‑Lif, Tunisia. (1)
MS Omics, Biohub Chicago, USA (1)
Maisonneuve-Rosemont Hospital Research Center and Department of Medicine, University of Montréal, Montréal H3C 3J7, Québec, Canada (1)
Max Planck Unit for the Science of Pathogens Charitéplatz 1 | D-10117 Berlin | Germany (1)
Max Planck Unit for the Science of Pathogens, D-10117 Berlin, Germany Institute for Biology, Humboldt University, D-10115 Berlin, Germany (1)