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ProteomicsReprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure
Trans-acting regulatory RNAs have the capacity to base pair with more mRNAs than experimentally detected under given conditions. This raises the question whether the sRNA target specificity can change upon metabolic or environmental changes. In Sinorhizobium meliloti, the sRNA rnTrpL is derived from...
ORGANISM(S): Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) 
2021-08-10 | PXD019516 | Pride
Small proteins Posttranscriptional regulation Attenuator Multiresistance Sinorhizobium meliloti Quantification 
ProteomicsThe small proteome of the nitrogen-fixing plant symbiont Sinorhizobium meliloti
The Alphaproteobacterium Sinorhizobium meliloti lives in soil and is capable of fixing molecular nitrogen in symbiosis with legume plants. In this work, the small proteome of S. meliloti strain 2011 was studied to uncover translation of both annotated and novel small open reading frame (sORF)-encode...
ORGANISM(S): Sinorhizobium meliloti 2011 
2023-03-13 | PXD034931 | Pride
Rhizobia Proteomics Proteogenomics Sorf Small proteins Ribosome profiling 
TranscriptomicsCopy number Analysis of Head and Neck cancer cases from two high incidence regions
The principal objective of this work was to investigate the somatic copy number changes that influence the risk of head and neck cancer occurrence and outcome from two large comprehensive case series in Europe and South America. A second objective was to investigate how these somatic changes intera...
ORGANISM(S): Homo sapiens 
2016-06-14 | E-MTAB-4863 | biostudies-arrayexpress
ProteomicsThe leader peptide peTrpL forms antibiotic-containing ribonucleoprotein complexes for posttranscriptional regulation of multiresistance genes
Bacterial ribosome-dependent attenuators are widespread posttranscriptional regulators. They harbour small upstream ORFs (uORFs) encoding leader peptides, for which no functions in trans are known yet. In the soil-dwelling plant symbiont Sinorhizobium meliloti, the tryptophan biosynthesis gene trpE(...
ORGANISM(S): Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) 
2020-05-19 | PXD018342 | Pride
Small proteins Posttranscriptional regulation Attenuator Multiresistance Sinorhizobium meliloti Quantification 
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, a potentially fatal foodborne disease. Many different Listeria strains and serotypes exist, buthowever a proteogenomic resource that which would allow to bridges the gap in ourthe molecular understanding of th...
ORGANISM(S): Listeria Monocytogenes 
2021-01-26 | PXD014294 | panorama
ProteomicsDrosophila melanogaster exp 135
PeptideRank is an approach that uses a rank-based algorithm for peptide detectability prediction from shotgun proteomics data. The best performance is achieved when it is trained on organism-specific shotgun proteomics datasets. The Drosophila shotgun proteomics data presented here have been used am...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2019-06-04 | PXD000726 | Pride
Nuclear and cytoplasmic fraction Kc167 cells Oge Drosophila melanogaster 
ProteomicsDrosophila melanogaster exp 132
PeptideRank is an approach that uses a rank-based algorithm for peptide detectability prediction from shotgun proteomics data. The best performance is achieved when it is trained on organism-specific shotgun proteomics datasets. The Drosophila shotgun proteomics data presented here have been used am...
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2019-06-04 | PXD000730 | Pride
Nuclear and cytoplasmic fraction Kc167 cells Drosophila melanogaster 
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, the third most common foodborne disease. Many different Listeria strains and seroptypes exist, however a proteogenomic resource which would provide a basis for bridging the gap in the molecular understanding b...
ORGANISM(S): Listeria Monocytogenes Egd-e (ncbitaxon:169963) Listeria Monocytogenes Str. Scott A (ncbitaxon:1027396) 
2019-06-01 | MSV000083881 | MassIVE
ProteomicsT00
yeast cell-cycle experiment
ORGANISM(S): Saccharomyces Cerevisiae (yeast) 
2007-12-31 | PAe000093 | PeptideAtlas
ProteomicsD.melanogaster - Whole organism, SC (Brunner,nat_biotechnol,2007)
abundance based on Spectral counting, Interaction consistency score: 20.4, Coverage: 62
ORGANISM(S): 7227 
2007-00-00 | 1963625303 | PAXDB
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