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Unknown (91681)
Genomics (17806)
Transcriptomics (2851)
Proteomics (1059)
Clinical (568)
Metabolomics (165)
Other (105)
Methylation profiling (86)
Genomic (66)
Models (30)
Multiomics (7)

Organisms

Homo sapiens (2015)
Mus musculus (1148)
Rattus norvegicus (170)
Arabidopsis thaliana (95)
Sus scrofa (39)
Saccharomyces cerevisiae (33)
Staphylococcus aureus (27)
Drosophila melanogaster (25)
Bos taurus (22)
Danio rerio (21)
Gallus gallus (20)
Populus x canadensis (15)
Schizosaccharomyces pombe (12)
Caenorhabditis elegans (10)
Zea mays (9)
Canis lupus familiaris (9)
Oryza sativa (9)
cellular organisms (7)
Medicago truncatula (7)
Anopheles gambiae (6)
Helianthus annuus (6)
Solanum lycopersicum (6)
Brassica napus (5)
Salmo salar (4)
Escherichia coli K-12 (3)
Coturnix japonica (3)
Anopheles merus (2)
Pseudo-nitzschia multistriata (2)
Mus musculus domesticus (2)
Blattabacteriaceae (1)

Organisms

Homo sapiens (1738)
Mus musculus (1015)
soil metagenome (151)
Rattus norvegicus (115)
Escherichia coli (97)
human gut metagenome (78)
Staphylococcus aureus (55)
unidentified (51)
Acinetobacter baumannii (46)
Arabidopsis thaliana (45)
Klebsiella pneumoniae (41)
Bacteria (39)
marine metagenome (35)
Bos taurus (35)
Sus scrofa (34)
mouse gut metagenome (33)
Drosophila melanogaster (32)
rhizosphere metagenome (32)
Pandoraea pneumonica (30)
Pseudomonas aeruginosa (29)
Gallus gallus (27)
gut metagenome (25)
Oryza sativa (24)
Xanthomonas oryzae pv. oryzae (24)
sediment metagenome (24)
Saccharomyces cerevisiae (24)
Salmonella enterica subsp. enterica serovar Enteritidis (23)
feces metagenome (23)
freshwater metagenome (22)
Bacillus velezensis (20)

Repository

ENA (17132)
geo (2452)
biostudies-arrayexpress (977)
pride (591)
EGA (254)
iProX (253)
MetaboLights (134)
MassIVE (130)
jPOST (74)
dbGaP (66)
GNPS (30)
BioModels (29)
EVA (28)
PanoramaPublic (8)
NODE (6)
GPMDB (3)
PeptideAtlas (3)
Cell Collective (1)

Tissue

Cell culture (123)
Epithelial cell (31)
Blood plasma (29)
Permanent cell line cell (25)
Brain (22)
Liver (19)
Blood serum (14)
Saliva (14)
Heart (13)
Whole body (13)
Plant cell (12)
Leaf (11)
Hepatocyte (11)
Macrophage (10)
Blood (10)
Skin (8)
Kidney (8)
Monocyte (8)
Extracellular vesicle (7)
Blood cell (7)
Colon (7)
Fibroblast (6)
B cell (6)
Embryo (3)
Pancreas (3)
Medium (1)
Peripheral blood mononuclear cells (1)
Bone marrow CD45+ cells (1)
Breast (1)
Others (1)

Disease

Colorectal Neoplasms (247)
Colorectal cancer (34)
Neoplasms (29)
Rectal Neoplasms (14)
Adenoma (11)
Normal (10)
Colonic Neoplasms (10)
Neoplasm Metastasis (9)
Alzheimer's disease (7)
Breast cancer (7)
Carcinoma (7)
Bowel cancer (6)
Stomach Neoplasms (6)
Bowel Cancer (5)
Multiple myeloma (4)
Lung cancer (3)
Crohn's disease (2)
Mastitis (2)
Mild cystic fibrosis, pulmonary disease (1)
Adenoma (1)
Active Crohn's disease (1)
Marsh 3 (1)
WT (1)
Cirrhosis (1)
Midgut carcinoid liver metastasis (1)
Mixoid liposarcoma (1)
Fibrosis (1)
NA (1)
Intracranial aneurysm and subarachnoid haemorrhage (1)
Glioblastoma (1)

Technology Type

Mass Spectrometry (591)
Shotgun proteomics (257)
Bottom-up proteomics (144)
Mass spectrometry (89)
Data-dependent acquisition (70)
Gel-based experiment (60)
Affinity purification coupled with mass spectrometry proteomics (45)
Data-independent acquisition (44)
Mass spectrometry assay (41)
Illumina HiSeq 2000 (18)
Illumina HiSeq 2000, ILLUMINA (5)
NMR spectroscopy (5)
Illumina HiSeq 2500, ILLUMINA (3)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II (2)
Illumina, Sequenom (1)
Human Cardio Metabochip (1)
Illumina Multi-EthnicGlobal_A1 (1)
Illumina Omni 2.5 (1)
ILLUMINA, Illumina HiSeq 4000 (1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500 (1)
Illumina HiScanSQ, ILLUMINA (1)
Infinium_370k - GenomeStudio (1)
Illumina (1)
Illumina HiSeq 2000, Illumina HumanOmni2-5_8v1_A (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina 1.2M, Affymetrix 6.0, Human670-QuadCustom v1 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina NovaSeq 6000 (54)
Illumina HiSeq 2000 (43)
Illumina HiSeq 2500 (41)
Illumina HiSeq 4000 (26)
NextSeq 500 (25)
NextSeq 2000 (21)
Illumina HiSeq 3000 (15)
Illumina NovaSeq X (8)
Illumina MiSeq (7)
Illumina Genome Analyzer II (5)
NextSeq 550 (5)
NA (4)
DNBSEQ-G400 (3)
Infors HT Multitron shaker (2)
454 GS FLX+ (2)
HiSeq X Ten (2)
Illumina HiSeq 1500 (2)
Dell precision T7500 (1)
Infinium MethylationEPIC v2.0 Kit (1)
Wizard Genomic DNA Purification Kit (1)
Agilent Bioanalyzer 2100 (or TapeStation); Qubit 4 Fluorometer (Thermo Fisher Scientific) (1)
NanoDrop ND-1000 spectrophotometer (1)
10x Genomics Chromium Controller, PCR thermocycler, Agilent 2100 Bioanalyzer with High Sensitivity DNA chip (for quality control) (1)
Water bath (for enzymatic dissociation), cell strainer (70-μm), benchtop centrifuge, automated cell counter/hemocytometer, biological safety cabinet (1)
Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet (1)
Illumina HiSeq Xten (1)
ILLUMINA (1)
C1000 Touch PCR thermal cycler (Bio-Rad) (1)
Affymetrix GeneTitan™ System (1)
Affymetrix GeneTitan™ Instrument (1)

Publication Date

2025 (671)
2026 (616)
2024 (496)
2023 (334)
2021 (314)
2022 (261)
2020 (196)
2013 (181)
2014 (166)
2016 (160)
2019 (159)
2015 (151)
2018 (149)
2011 (143)
2010 (128)
2012 (107)
2017 (95)
2008 (80)
2009 (66)
2007 (45)
2006 (22)
2005 (15)
2003 (5)
2004 (2)

UNIPROT ID/AC

P40763 (3)
O60674 (3)
P05231 (3)
P01112 (3)
P04049 (3)
Q02750 (3)
P28482 (3)
P23458 (3)
P17676 (2)
P15260 (2)
P67775 (2)
P62136 (2)
P08887 (2)
P40189 (2)
P01579 (2)
O14543 (2)
P42224 (2)
P01137 (2)
Q07889 (2)
Q06124 (2)
P62993 (2)
O15524 (2)
P0AA04 (1)
P50456 (1)
C3TDU2 (1)
Q14609 (1)
Q15116 (1)
P16410 (1)
P0ACJ8 (1)
P00936 (1)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000229353 (1)
ENSG00000147251 (1)

CHEBI ID

CHEBI:58052 (2)
CHEBI:28061 (2)
CHEBI:58336 (2)
CHEBI:30623 (2)
CHEBI:58674 (2)
CHEBI:17180 (2)
CHEBI:63528 (2)
CHEBI:4581 (2)
CHEBI:28460 (2)
CHEBI:61993 (2)
CHEBI:33539 (2)
CHEBI:47942 (2)
CHEBI:16659 (2)
CHEBI:495505 (2)
CHEBI:58439 (2)
CHEBI:57692 (2)
CHEBI:58367 (2)
CHEBI:36264 (2)
CHEBI:15138 (2)
CHEBI:15748 (2)
CHEBI:29035 (2)
CHEBI:46911 (2)
CHEBI:57986 (2)
CHEBI:57538 (2)
CHEBI:58735 (2)
CHEBI:58369 (2)
CHEBI:57955 (2)
CHEBI:61555 (2)
CHEBI:61481 (2)
CHEBI:58462 (2)

Metabolite Name

Uracil (29)
Xanthine (26)
Uridine (25)
Hypoxanthine (25)
Creatine (24)
Taurine (23)
Pantothenic acid (22)
4-Hydroxybenzaldehyde (22)
Cytosine (22)
Azelaic acid (22)
L-Tyrosine (22)
L-Phenylalanine (22)
Glycine (21)
L-Histidine (21)
Glycocholic acid (21)
Palmitic acid (21)
Adenine (21)
Cytidine (21)
Ornithine (20)
Citric acid (20)
Adenosine (20)
Glutaric acid (20)
Choline (19)
Inosine (19)
Betaine (18)
Succinic acid (18)
Creatinine (18)
L-Glutamic acid (17)
Fumaric acid (17)
Oleamide (17)

First Public Date

2026 (3644)
2025 (2885)
2024 (1964)
2014 (1253)
2023 (1193)
2022 (979)
2015 (962)
2021 (926)
2020 (903)
2017 (620)
2019 (586)
2013 (511)
2018 (415)
2016 (267)
2012 (12)
2010 (11)
2011 (1)

Modelling Approach

Ordinary differential equation model (18)
Constraint-based model (5)
Computational model (1)
Differential algebraic equation model (1)
Logical model (1)
Metabolic network (1)

Study status

Completed (234)
Recruiting (140)
Not provided (80)
Not yet recruiting (50)
Active, not recruiting (37)
Terminated (12)
Enrolling by invitation (7)
Withdrawn (4)
Suspended (3)
Ongoing (1)

Lab affiliation

Bioplatforms Australia (9)
Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (7)
Proteomics - Bioinformatics (5)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (4)
Department of Cell Biology, Harvard Medical School, Boston MA (4)
Head of the Curie Institute Mass Spectrometry Platform (4)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University, Denmark (3)
University of Bordeaux, INSERM, MRGM, U1211, F-33000 Bordeaux, France. ImmunoConcEpT, CNRS UMR 5164, INSERM ERL 1303, University of Bordeaux, Bordeaux, France. (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Spectrométrie de Masse Biologique et Protéomique SMBP, ESPCI Paris, PSL University, LPC CNRS UMR 8249, 10 rue Vauquelin F-75005 Paris, France (2)
Xinxiang Medical University (2)
Department of Life and Environmental Sciences, University of Cagliari (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Technical University of Munich, Germany (2)
Crown Bioscience (2)
Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University, Prague, Czech Republic (2)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, France Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, France (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands (2)
IPHC (LSMBO - Laboratoire de Spectrométrie de Masse Bio-Organique), UMR 7178, Université de Strasbourg, CNRS (2)
Chongqing Medical University (2)
Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore (2)
Interfaculty Institute for Microbiology and Infection Medicine Tübingen Eberhard-Karls Universität Tübingen Auf der Morgenstelle 28 72072 Tübingen (2)
Tongji University (2)
Nanyang Technological University (2)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (2)
Peking University (2)
Novo Nordisk Foundation Center for Protein Research (lab head) (1)
Department of Hepatobiliary Surgery, the First Affiliated Hospital(Southwest Hospital) of Army Military Medical University, Chongqing 400038, China. (1)
Department of Molecular Hematology, Sanquin Research, Amsterdam. (1)
1 Dept Neuroscience, Imaging and Clinical Sciences, “G. d’Annunzio” University Chieti-Pescara, Italy 2 Interuniversity Institute of Myology, Italy; lorenzo.marramiero@unich.it; es.difilippo@unich.it; tiziana@pietrangelo@unich.it; stefania.fulle@unich.it; rosa.mancinelli@unich.it 3 Functional Evaluation Laboratory, “G. d’Annunzio” University Chieti-Pescara, Italy (1)