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MetabolomicsLipid Data Analyzer: The LDA algorithm against the in silico library LipidBlast (LipidBlast benchmarking experiment)
Lipid Data Analyzer (LDA; http://genome.tugraz.at/lda2) provides automated and reliable annotation of lipid species and their molecular structures in high-throughput data from chromatography-coupled tandem mass spectrometry using embedded rule sets. Using various low- and high-resolution mass spectr...
2017-11-07 | MTBLS397 | MetaboLights
MetabolomicsPIXiE: An Algorithm for Automated Ion Mobility Arrival Time Extraction and Collision Cross Section Calculation using Global Data Association
Not available
ORGANISM(S): Standard 
ST000602 | MetabolomicsWorkbench
TranscriptomicsClassification of a large micro-array dataset. Algorithm comparison and analysis of drug signatures.
Classification of a large micro-array dataset. Algorithm comparison and analysis of drug signatures. These data support the publication titled "Classification of a large micro-array dataset. Algorithm comparison and analysis of drug signatures.". Some of the calculations in the publication...
ORGANISM(S): Rattus norvegicus 
2005-05-01 | E-GEOD-2187 | biostudies-arrayexpress
GenomicsAGA algorithm
Aminoglycosides resistance mechanisms inference algorithm
PRJEB29576 | ENA
TranscriptomicswuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data
Copy number variants (CNVs) are currently defined as genomic sequences that are polymorphic in copy number and range in length from 1,000 to several million base pairs. Among current array-based CNV detection platforms, long-oligonucleotide arrays promise the highest resolution. However, the perfo...
ORGANISM(S): Mus musculus 
2008-03-11 | E-GEOD-10511 | biostudies-arrayexpress
GenomicsPhenotypic carbapenemase algorithm in Pseudomonas aeruginosa
Diagnostic algorithm for detection of carbapenemases and ESBLs in carbapenem-resistant Pseudomonas aeruginosa
PRJEB82838 | ENA
ProteomicsQuantative pTyr protein complex
Our current research focuses on the complex-centric quantification of pTyr protein complexes. We initially constructed a tri-functional probe based on pTyr superbinder (SH2-S) for the enrichment of pTyr protein complexes. The pTyr protein complexes were separated by ion exchange chromatography (IEC)...
ORGANISM(S): Homo Sapiens 
PXD052742 |
GenomicsA post-processing algorithm for miRNA microarray data
A post-processing algorithm for miRNA microarray data
PRJNA575757 | ENA
TranscriptomicsAffymetrix SNP array data for NSCLC and CRC
Cancer is a heterogeneous disease caused by genomic aberrations and characterized by significant variability in clinical outcome and response to therapies. Several subtypes of common cancer types have been identified based on alterations of individual cancer genes, such as HER2, EGFR, and others. Ho...
ORGANISM(S): Homo sapiens 
2010-08-06 | E-GEOD-20481 | biostudies-arrayexpress
GenomicssmORFer: a modular algorithm to detect small ORFs in prokaryotes
smORFer: a modular algorithm to detect small ORFs in prokaryotes
PRJNA632889 | ENA
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