Allele-specific binding

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CHEBI ID

CHEBI:132542 (1)
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Metabolite Name

3-hydroxybutyric acid (1)
ADP (1)
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Carnosine (1)
Cer (d34:0)a.(d18:0/16:0) (1)
Cer (d34:0)b.(d16:0/18:0) (1)
Cer (d40:0).(d18:0/22:0) (1)
Cer (d40:1)b.(d18:1/22:0) (1)

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Classification

bacteria (2)
fungi (2)

Modification

2x(15)N labeled L-lysine (1)
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Study type

Transcription profiling by array (428)
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2013 (160)
2014 (155)
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2001 (6)
2000 (6)
1998 (5)
1999 (1)

Lab affiliation

Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg Germany (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, the Netherlands 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics (1)
Biomolecular Mass Spectrometry and Proteomics Utrecht Institute for Pharmaceutical Sciences (UIPS) (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand (1)
Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Pathum Wan, Bangkok, Thailand 10330 (1)
Charité-University Medicine Berlin (1)
Chief, Division of Immunology, Boston Children’s Hospital Professor of Pediatrics and Medicine (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology (NTNU), PO Box 8905, N-7491, Trondheim, Norway Phone: +47 72573075, Fax: +47 72576400 (1)
Department of Life Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel (1)
Department of Microbiology and Immunology, Michigan Medicine, University of Michigan, Ann Arbor, MI 48109, USA (1)
Department of Orthopaedic Surgery School of Medicine University of California San Diego 9500 Gilman Drive MC0863 La Jolla, CA, USA (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (1)
Division of Molecular Genetics, Oncode Institute, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; (1)
Division of Product Quality Research 4, Office of Product Quality Research, Office of Product Quality, Center for Drug Evaluation and Research, U.S. Foodand Drug Administration, Silver Spring, Maryland, USA (1)
Emeritus Group Leader Protein Phosphorylation Laboratory The Francis Crick Institute 1 Midland Road London NW1 1AT (1)
Faculty of Biology, Technion - Israel Institute of Technology (1)
Head Proteomics Group | Leiden University Medical Center |Center for Proteomics and Metabolomics | PO Box 9600 | 2300 RC Leiden | The Netherlands (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Hirosaki University Graduate School of Medicine, Department of Biochemistry and Genome Biology, JAPAN (1)
KU Leuven - University of Leuven, Department of Neurosciences, Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), B-3000 Leuven, Belgium; VIB, Center for Brain and Disease Research, Laboratory of Neurobiology, Leuven, Belgium; University Hospitals Leuven, Department of Neurology, Leuven, Belgium. (1)
MRC Cancer Unit, University of Cambridge; Hutchison/MRCResearch Centre, Box 197, Cambridge Biomedical Campus, Cambridge, CB2 0XZ, UK (1)
Molecular Cell Biolody, Weizmann Institute of Science. (1)
Molecular NeuroTherapeutics Laboratory Department of Neuroscienc Mayo Clinic Florida 4500 San Pablo Rd Jacksonville, FL 32224, USA (1)
Nankai University (1)

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Allele-specific Methylation of Human Placental Tissue

In this study, we screened human placental samples for allele-specific methylation and subsequently novel imprinted genes associated with these regions. We used reduced representation bisulfite sequencing to identify partially methylated CpG islands (CGIs) in the human placental genome. We were able...

ORGANISM(S): Homo sapiens

2013-10-09 | E-GEOD-40955 | biostudies-arrayexpress

Allele-specific chromosome conformations induced by a transgene- and locus-dependent imprinting

A reporter transgene displayed parental imprinting in mouse embryos when positioned into the Itga6 gene. The strong lacZ pattern of expression scored in embryos inheriting the transgene from a male was not present when transmitted from a female. The transgene exhibited maternal allele-specific DNA ...

ORGANISM(S): Mus musculus

2013-07-03 | E-GEOD-48148 | biostudies-arrayexpress

Chromosome wide analysis of parental allele specific chromatin and DNA methylation in mouse

This SuperSeries is composed of the following subset Series: GSE26720: Chromosome wide analysis of parental allele specific chromatin and DNA methylation GSE26891: Chromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr7 GSE26892: Chromosome wide ana...

ORGANISM(S): Mus musculus

2011-03-31 | E-GEOD-26947 | biostudies-arrayexpress

Dynamics of gene silencing during X inactivation using allele-specific RNA-Seq

Background: During early embryonic development, one of the two X chromosomes in mammalian female cells is inactivated to compensate for a potential imbalance in transcript levels with male cells containing a single X chromosome. We use mouse female Embryonic Stem Cells (ESCs) with nonrandom XCI and ...

ORGANISM(S): Mus musculus

2015-06-15 | E-GEOD-60738 | biostudies-arrayexpress

Allele specific expression in Arabidopsis thaliana Col-0 x Van-0 F1 hybrids

This SuperSeries is composed of the following subset Series: GSE16503: Genomic DNA concentration series in Allele Specific Expression study GSE16504: Genomic DNA mixture series in Allele Specific Expression study GSE16505: Genomic DNA 1:1 mixtures in Allele Specific Expression study GSE16506: mRNA s...

ORGANISM(S): Arabidopsis thaliana

2009-08-15 | E-GEOD-16520 | biostudies-arrayexpress

Allele-specific binding of ZFP57 in the regulation of imprinted and mono-allelic expression

Selective maintenance of genomic methylation imprints during pre-implantation development is required for parental origin-specific expression of imprinted genes. The Kruppel-like zinc finger protein ZFP57 acts as a factor necessary for maintaining the DNA methylation memory at multiple imprinting co...

ORGANISM(S): Mus musculus

2015-05-08 | E-GEOD-55382 | biostudies-arrayexpress

Chromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr15

Imprinted genes are monoallelically expressed according to parental inheritance. The maternally and paternally inherited alleles are distinguished epigenetically by DNA methylation and histone modifications. Chromosome-wide Chromatin immunoprecipitation (ChIP) and MIRA analysis of MatDup.dist7 and ...

ORGANISM(S): Mus musculus

2011-03-31 | E-GEOD-26893 | biostudies-arrayexpress

Chromosome wide analysis of parental allele specific chromatin and DNA methylation along mouse distal chr7

ORGANISM(S): Mus musculus

2011-03-31 | E-GEOD-26891 | biostudies-arrayexpress

Chromosome wide analysis of parental allele specific chromatin and DNA methylation along the central part of mouse chr7

ORGANISM(S): Mus musculus

2011-03-31 | E-GEOD-26892 | biostudies-arrayexpress

mRNA samples in Allele Specific Expression study

Col-0 and Van-0 total RNA were mixed at 1:1. Total RNA also extracted from F1 hybrid samples from Col x Van and Van x Col. PolyA RNA were purified and double-strand cDNA were synthesized, followed by bioprime random labeling. A total of 16ug labelled products were hybridized to AtSNPtile1. cis regul...

ORGANISM(S): Arabidopsis thaliana

2010-05-06 | E-GEOD-16506 | biostudies-arrayexpress

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