Alleles - OmicsDI

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Mus musculus (722)
Homo sapiens (620)
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human gut metagenome (5)
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synthetic construct (5)
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Technology Type

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Mulitple CNV platforms (1)
HiSeq X Ten, ILLUMINA (1)
Illumina Human 1.2M Duo custom BeadChips v1 - Genome Studio, Illumina Human 660K Quad BeadChips - Illuminus, Illumina Human-Ref 8 v3.0 expression array (1)
Affymetrix_250K(Nsp) - gtype (1)
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Illumina HiSeq 2000, ILLUMINA (1)

Instrument Platform

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Publication Date

2025 (209)
2015 (197)
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2010 (186)
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2014 (177)
2012 (163)
2013 (157)
2011 (137)
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2021 (121)
2016 (107)
2008 (107)
2020 (102)
2019 (96)
2018 (93)
2017 (88)
2009 (66)
2007 (63)
2006 (21)
2005 (15)
2004 (12)
2003 (1)

UNIPROT ID/AC

P92973 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
Q9LKL2 (1)
O81713 (1)

CHEBI ID

CHEBI:17345 (3)
CHEBI:28498 (2)
CHEBI:85851 (2)
CHEBI:15811 (2)
CHEBI:134487 (2)
CHEBI:64521 (2)
CHEBI:16349 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:64431 (2)
CHEBI:64446 (2)
CHEBI:66857 (2)
CHEBI:64516 (2)
CHEBI:86472 (2)
CHEBI:66849 (2)
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CHEBI:64566 (2)
CHEBI:64561 (2)
CHEBI:70744 (2)
CHEBI:64560 (2)
CHEBI:16831 (2)
CHEBI:17239 (2)
CHEBI:17752 (2)
CHEBI:17659 (2)
CHEBI:17361 (2)
CHEBI:16977 (2)
CHEBI:16576 (2)
CHEBI:33699 (1)

Metabolite Name

L-Alanine (3)
L-Leucine (3)
Adenine (3)
Guanosine-diphosphate (2)
L-Aspartate (2)
Palmitic Acid (2)
N6-Acetyl-L-lysine (2)
L-Lysine (2)
Trehalose-6-phosphate (2)
L-Cystine (2)
L-Citrulline (2)
L-Arginine (2)
L-Methionine (2)
L-Asparagine (2)
Pentadecanoic Acid (2)
L-Phenylalanine (2)
L-Glutamine (2)
L-Pyroglutamic acid (2)
L-Tyrosine (2)
Dihydroxyacetone phosphate (2)
N-Acetyl-L-aspartic acid (2)
Oleic acid (2)
Uracil (2)
Adenosine (2)
Guanosine (2)
Inosine (2)
TG(16:0/22:5/18:1) or TG(20:4/18:1/18:1) (1)
PC(O-38:3) or PC(P-38:2) (1)
All-cis-4,7,10,13,16,19-Docosahexaenoic Acid (1)
15-Nervonic acid (1)

First Public Date

2014 (385)
2025 (321)
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2026 (304)
2020 (248)
2022 (246)
2017 (239)
2023 (238)
2021 (235)
2019 (191)
2018 (184)
2013 (158)
2015 (152)
2016 (98)
2012 (8)
2011 (6)
2010 (5)

Modelling Approach

Delayed differential equation model (2)
Constraint-based model (1)
Ordinary differential equation model (1)

Study status

Completed (2)
Terminated (1)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (5)
Division of Genetic and Genomic Medicine, Department of Pediatrics, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA (3)
Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany (3)
University of Oxford (3)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (3)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (2)
Department of Genetic Medicine and Development, Faculty of Medicine, University of Geneva, Switzerland (2)
Immunology Unit, Department of Cell Biology, Physiology and Immunology, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain Biosensing and Bioanalysis Group, Institut de Biotecnologia i Biomedicina (IBB), Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès), Spain (2)
Biology department, Washington University in Saint Louis, Saint Louis, MO, USA (2)
The Jenner Institute Nuffield Department of Medicine University of Oxford (2)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
Professor Anthony W Purcell Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Institut für Experimentelle und Klinische Pharmakologie und Toxikologie, PZMS, Universität des Saarlandes, Geb. 46, 66421 Homburg, Germany (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Proteomics Center, Erasmus MC (2)
Department of Molecular, Cellular and Developmental Biology. Yale University, 260 Whitney Ave, New Haven, CT. 06520, USA (2)
Laboratory of Transcriptional Networks, Department of Cellular, Computational, and Integrative Biology, CIBIO, University of Trento, via Sommarive 9, 38123 Trento, Italy (1)
Charité-University Medicine Berlin (1)
Institut Curie, PSL Research University, CNRS, UMR 144, 26 rue d’Ulm, F-75005, Paris, France. (1)
Jenner Institute Antigen Discovery Group University of Oxford (1)
Ludwig Institute for Cancer Research Lausanne Centre de recherche Agora Rue du Bugnon 25A CH-1011 Lausanne (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
University of California Davis, College of Agricultural and Envirnmental Sciences, Environmental Toxicology (1)
DKFZ - German Cancer Research Center, “Division of Virus-Associated Carcinogenesis”, Im NeuenheimerFeld 280, 69120 Heidelberg, Germany (1)
Department of Internal Medicine, Virginia Commonwealth University (VCU), Richmond, VA, USA (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA Center for Individualized Medicine, Mayo Clinic, Rochester, MN 55905, USA (1)
Univ Rennes, Inserm, EHESP, Irset (Institut de recherche en santé, environnement et travail) - UMR_S 1085, F-35042 Rennes, France (1)
Tumor Immunology and Immunotherapy group, Vall d'Hebrón Institute of Oncology, Barcelona, Spain (1)
Institute for Cell Biology, Dept. Immunology Auf der Morgenstelle 15, 72076 Tübingen, Germany Partner Site of the German Cancer Consortium (1)

Keyword

ARQ 197 (1)
Second-line therapy (1)
Genotyping (1)
Area-under-the concentration-time curve (1)
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Wild-type KRAS (1)
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IsPrivate

False (4)

Classification

bacteria (73)
fungi (19)
protozoa (16)
viruses (4)
helminths (1)

Modification

4 (1)

Study type

Transcription profiling by array (562)
RNA-seq of coding RNA (227)
Comparative genomic hybridization by array (64)
ChIP-seq (37)
Methylation profiling by array (35)
Genotyping by array (32)
DNA-seq (30)
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Other (20)
RNA-seq of coding RNA from single cells (20)
Unknown experiment type (15)
Methylation profiling by high throughput sequencing (15)
ChIP-chip by tiling array (13)
Transcription profiling by tiling array (8)
Genotyping by high throughput sequencing (3)
Animal - Two-color microarray (2)
Animal - Single-cell sequencing (2)
Plant - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
4C (2)
ATAC-seq (2)
Proteomic profiling by array (2)
ChIP-chip by SNP array (1)
Human - Two-color microarray (1)
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2001 (137)
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1998 (72)
1997 (28)

Location

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Therapeutic rescue of pathogenic asparaginyl-tRNA synthetase alleles

Pathogenic alleles in the cytoplasmic asparaginyl-tRNA synthetase (NARS1) are associated with infant and juvenile onset disease, with no current disease-specific treatments. We developed a tractable human cell system to study disease-causing NARS1 alleles that can be adapted to investigate NARS1 and...

ORGANISM(S): Homo sapiens (Human)

2026-06-19 | PXD068839 | Pride

New HLA alleles

PRJEB29858 | ENA

Drosophila melanogaster strain:qin mutation alleles

PRJNA76565 | ENA

KIR alleles in primates.

KIR alleles in primates found with NGS.

PRJEB28291 | ENA

MHC class II alleles in Great Apes

PRJEB27405 | ENA

Novel human B cell receptor germline alleles

Novel germline alleles predicted by cAb_Rep database

PRJEB31020 | ENA

Presentation of DNAJB1-PRKACA fusion neoantigens by different HLA class I alleles

Fibrolamellar carcinoma (FLC) is a liver tumor with a high mortality burden and few treatment options. A promising therapeutic vulnerability in this disease is its highly conserved driver mutation: a gene fusion between DNAJB1 and PRKACA, which is expressed in virtually all FLC tumors and could be a...

ORGANISM(S): Homo sapiens (Human)

2024-05-24 | PXD042316 | Pride

Fusion neoantigens Hla class i Cd8 t cell Dnajb1-prkaca Fibrolamellar carcinoma

Novel HLA-Alleles

Characterisation and Confirmation of new HLA-Alleles found by DKMS Life Science Lab

PRJEB21583 | ENA

Exploration of essential gene functions via titratable promoter alleles

Exploration of essential gene functions via titratable promoter alleles. Collection of microarray experiments described in Mnaimneh et al. 2004. Keywords = Yeast Keywords = Saccharomyces cerevisiae Keywords = oligonucleotide Keywords = dual channel Keywords: other

ORGANISM(S): Saccharomyces cerevisiae

2010-06-09 | E-GEOD-1404 | biostudies-arrayexpress

RNA-seq for sf3b-1 alleles

PRJNA532357 | ENA

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