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TranscriptomicsAnalysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with dioxane, glycolate or pyruvate
Analysis of gene expression in Pseudonocardia dioxanivorans strain CB1190 during growth with dioxane, glycolate or pyruvate. Three treatments, based on carbon source used for growth: pyruvate, dioxane and glycolate. Triplicate microarrays (biological replicates) were prepared for each treatment. Pyr...
ORGANISM(S): Pseudonocardia dioxanivorans CB1190 
2012-02-21 | E-GEOD-33197 | biostudies-arrayexpress
TranscriptomicsDevelopment of a Fluorescence-Activated Cell Sorting Method Coupled with Whole Genome Amplification To Analyze Minority and Trace Dehalococcoides Genomes in Microbial Communities
Dehalococcoides mccartyi are functionally important bacteria that catalyze the reductive dechlorination of chlorinated ethenes. However, these anaerobic bacteria are fastidious to isolate, making downstream genomic characterization challenging. In order to facilitate genomic analysis, a fluorescence...
ORGANISM(S): Dehalococcoides mccartyi 195 
2015-01-31 | E-GEOD-54040 | biostudies-arrayexpress
TranscriptomicsRhodococcus sp. RHA1 grown on propane versus pyruvate
three late exponential phase Rhodococcus sp. RHA1 propane-grown cultures compared to pyruvate-grown cultures three two-colour microarrays
ORGANISM(S): Rhodococcus sp. RHA1 
2010-06-25 | E-GEOD-8480 | biostudies-arrayexpress
TranscriptomicsCharacterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions
Four stable and robust TCE-dechlorinating microbial communities were enriched from TCE-contaminated groundwater under four different conditions exploring two parameters, high and low methanogenic activity (Meth and NoMeth), with and without vitamin B12 supplement (MethB12 and NoMethB12, Meth and No...
ORGANISM(S): environmental samples 
2013-06-30 | E-GEOD-33530 | biostudies-arrayexpress
TranscriptomicsComparative Genomics of D. ethenogenes 195 and an Unsequenced Dehalococcoides-Containing Enrichment Culture
Tetrachloroethene (PCE) and trichloroethene (TCE) are prevalent groundwater contaminants that can be completely reductively dehalogenated by Dehalococcoides organisms. A Dehalococcoides-containing microbial consortium (ANAS) with the ability to degrade TCE to ethene, an innocuous end-product, was pr...
ORGANISM(S): Dehalobacter restrictus 
2010-06-20 | E-GEOD-9612 | biostudies-arrayexpress
TranscriptomicsThe design and validation of a Dehalococcoides genus microarray and its application to two newly isolated Dehalococcoides strains for comparative genomics
The chlorinated ethene-respiring bacteria of the genus Dehalococcoides are important for bioremediation. A microarray targeting genes from all available sequenced genomes of the Dehalococcoides genus was designed with 4305 probe sets to target 98.6% of all genes from strains 195, CBDB1, BAV1, and VS...
ORGANISM(S): Dehalococcoides sp. ANAS2 
2011-08-17 | E-GEOD-23707 | biostudies-arrayexpress
TranscriptomicsGlobal Gene Expression of Dehalococcoides Within a TCE-Dechlorinating Community Under Conditions of Periodic Substrate Supply
A microarray targeting four sequenced strains in the Dehalococcoides (Dhc) genus was used to analyze gene expression in a robust long-term trichloroethene (TCE)-degrading microbial community (designated ANAS) during feeding cycles that involve conditions of periodic substrate supply. The Dhc transcr...
ORGANISM(S): Dehalococcoides 
2013-03-01 | E-GEOD-42635 | biostudies-arrayexpress
TranscriptomicsQuerying the genomes of newly isolated un-sequenced Dehalococcoides strains via a microarray targeting the Dehalococcoides genus
The genomes of three newly isolated Dehalococcoides strains (11a, 11a5 and MB) were compared against known genomes in the Dehalococcoides genus via a microarray targeting four sequenced Dehalococcoides strains (195, CBDB1, BAV1, and VS). All three strains exhibit different dechlorination patterns, w...
ORGANISM(S): Dehalococcoides 
2013-03-01 | E-GEOD-27611 | biostudies-arrayexpress
UnknownPopulation dynamics and genetic connectivity in recent chimpanzee history.
Not available
S-EPMC9188271 | biostudies-literature
UnknownLocal genetic adaptation to habitat in wild chimpanzees.
Not available
S-EPMC12658325 | biostudies-literature
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