An Jia J - OmicsDI

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Unknown (6171)
Proteomics (227)
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Genomic (2)

Organisms

Homo sapiens (231)
Mus musculus (77)
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Mycobacteroides abscessus ATCC 19977 (1)

Organisms

Mus musculus (2)
Homo sapiens (1)

Repository

pride (120)
biostudies-arrayexpress (109)
iProX (78)
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EGA (57)
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Technology Type

Mass Spectrometry (120)
Mass spectrometry (54)
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Data-dependent acquisition (12)
Data-independent acquisition (10)
Mass spectrometry assay (5)
Top-down proteomics (5)
Proteogenomics (3)
Illumina Genome Analyzer II (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Affymetrix OncoScan FFPE Express (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina Infinium 1.2M (1)
Unknown (1)
NMR spectroscopy (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
Metaproteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - positive - reverse phase (21)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - negative - hilic (6)
Gas Chromatography MS - (5)
Q Exactive Plus (3)
Liquid Chromatography MS - (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
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Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - negative (2)
Illumina Genome Analyzer II (1)
LTQ (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
QSTAR Elite (1)
SYNAPT G2-Si (1)
TripleTOF 5600 (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Bruker (1)
Capillary electrophoresis MS - negative (1)
Capillary electrophoresis MS - positive (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)

Publication Date

2025 (46)
2023 (45)
2024 (44)
2022 (43)
2021 (37)
2012 (24)
2026 (17)
2020 (17)
2019 (16)
2014 (16)
2016 (15)
2015 (13)
2010 (13)
2009 (11)
2013 (9)
2018 (9)
2017 (7)
2011 (6)
2008 (5)
2007 (4)
2005 (1)

UNIPROT ID/AC

A0A024RC46 (2)
A2BFH1 (2)
A5A3E0 (2)
A6NHL2 (2)
A6NNZ2 (2)
B1AK88 (2)
B2RPK0 (2)
B2RXF3 (2)
B3KML9 (2)
B3KT93 (2)
B4DHB3 (2)
B4DL86 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B8ZZQ6 (2)
B9VP19 (2)
C9JM50 (2)
C9JRZ8 (2)
C9JSZ1 (2)
D3DPU2 (2)
E7EX29 (2)
E9PAV3 (2)
E9PFP8 (2)
E9PGC8 (2)
E9PKG0 (2)
F8VRH0 (2)
G8JLB6 (2)
H0Y4R1 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:17154 (19)
CHEBI:30769 (19)
CHEBI:15756 (18)
CHEBI:17368 (18)
CHEBI:17568 (18)
CHEBI:16704 (17)
CHEBI:16708 (17)
CHEBI:16750 (17)
CHEBI:16919 (17)
CHEBI:16335 (16)
CHEBI:16857 (16)
CHEBI:17596 (16)
CHEBI:17895 (16)
CHEBI:7916 (16)
CHEBI:15741 (15)
CHEBI:16737 (15)
CHEBI:17405 (15)
CHEBI:17750 (15)
CHEBI:17821 (15)
CHEBI:15354 (14)
CHEBI:15727 (14)
CHEBI:15891 (14)
CHEBI:16467 (14)
CHEBI:16828 (14)
CHEBI:16865 (14)
CHEBI:17015 (14)
CHEBI:17748 (14)
CHEBI:27823 (14)
CHEBI:15428 (13)
CHEBI:16359 (13)

Metabolite Name

Uracil (13)
Uric acid (12)
Xanthine (12)
Guanosine (11)
L-Proline (11)
L-Tyrosine (11)
Adenine (10)
Hypoxanthine (10)
Inosine (10)
L-Methionine (10)
L-Threonine (10)
Taurine (10)
Thymine (10)
Uridine (10)
4-Pyridoxic acid (9)
Creatine (9)
Creatinine (9)
Indole (9)
L-Arginine (9)
L-Histidine (9)
L-Tryptophan (9)
L-Valine (9)
Linoleic acid (9)
Ornithine (9)
Pyroglutamic acid (9)
Adenosine (8)
Azelaic acid (8)
Choline (8)
Cytosine (8)
Deoxycholic acid (8)

First Public Date

2014 (3)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Tsinghua University, China (4)
Northwest University (3)
Zhejiang University (3)
Cancer Research UK Cambridge Institute, University of Cambridge (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Children's Hospital of Nanjing Medical University (2)
College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, Hubei, P. R. China. (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
Peking University (2)
Tianjin Medical University General Hospital (2)
University of Science and Technology of China (2)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
Acupuncture-moxibustion and Orthopedic College, Hubei University of Chinese Medicine, Wuhan, China (1)
Aix Marseille Univ, CNRS, INSERM, CIML, Turing Centre for Living Systems, Marseille, France (1)
Assistant Professor, Biochemistry And Molecular Biology, School of Medicine, Tulane University (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
Associate Professor Microbiology and Immunology Department Upstate Medical University Weiskotten Hall Rm. 2273 766 Irving Avenue Syracuse, NY 13210 Tel 315.464.5870 (1)
BUCM (1)
Beijing Institute of Pharmacology and Toxicology (1)
Biobank of Nanjing Women and Children's Healthcare Hospital, Women's Hospital of Nanjing Medical University( Nanjing Women and Children's Healthcare Hospital), Nanjing 210004, China (1)
Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China (1)
Central South University (1)
Children's Hospital of Soochow University, Suzhou (1)
Collaborative Innovation Center of Henan Grain Crops and State Key Laboratory of Wheat and Maize Crop Science/College of Agronomy, Henan Agricultural University, Zhengzhou, China 450001 (1)
College of Animal Science and Technology, Anhui Agricultural University, P. R. China. (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, PR China (1)
College of Life Science, Northwest University (1)
College of Life Sciences, Northwest University (1)

IsPrivate

False (3)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (15)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (6)
ChIP-seq (5)
Comparative genomic hybridization by array (4)
Methylation profiling by array (4)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Other (1)

Release Date

2022 (872)
2025 (834)
2023 (799)
2024 (756)
2021 (637)
2020 (454)
2019 (404)
2018 (295)
2017 (244)
2016 (216)
2015 (171)
2026 (140)
2014 (135)
2013 (86)
2012 (82)
2011 (40)
2010 (40)
2009 (32)
2007 (15)
2008 (14)
2002 (4)
2005 (3)
2004 (3)
2001 (2)
2006 (1)
2003 (1)

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RNA-sequencing of cells derived from the site of inflammation of Juvenile Idiopathic Arthritis patients

Through RNA sequencing of CD4+ Tmemory/effector cells derived from the synovium of JIA patients and healthy controls, we analyzed the JIA gene expression signature. Treatment of autoinflammatory site-derived patient T cells with the BET-inhibitor JQ1 inhibited immune-related super-enhancers and pref...

ORGANISM(S): Homo sapiens

2015-09-15 | E-GEOD-71595 | biostudies-arrayexpress

Transcription profiling of peripheral blood samples from juvenile idiopathic arthritis (JIA) patients pre and post methotrexate therapy. Expression data from SPARKS CHARMS JIA cohort

Gene expression on peripheral blood mononuclear cells (PBMC) from SPARKS CHARMS juvenile idiopathic arthritis (JIA) cohort pre and post methotrexate therapy. This is the first study to our knowledge, to evaluate gene expression profiles in children with JIA before and after MTX, and to analyze genet...

ORGANISM(S): Homo sapiens

2010-09-27 | E-GEOD-23687 | biostudies-arrayexpress

Remission in Polyarticular Juvenile Idiopathic Arthritis

Identify biomarkers to predict response to therapy in polyarticular juvenile idiopathic arthritis (JIA) using gene expression microarrays. 42 samples from 13 controls, 14 active patients, 9 patients in clinical remission with medication (CRM), and 6 patients in clinical remission without medication ...

ORGANISM(S): Homo sapiens

2009-04-13 | E-GEOD-15645 | biostudies-arrayexpress

JBP1-seq: a fast and efficient method for genome-wide profiling of 5hmC

We developed a novel approach, J-binding protein 1 sequencing (JBP1-seq), that combines the benefits of an improved recombinant JBP1 protein, Nextera-based library construction, and nextgeneration sequencing (NGS) for genome-wide profiling of 5-hydroxymethylcytosine (5hmC). Compared with the orig...

ORGANISM(S): Homo sapiens

2014-11-26 | E-GEOD-61193 | biostudies-arrayexpress

Preparation of the RecJ3/4-RNase J complex from Haloferax volcanii

Purification of RecJ3/4-RNase J complex from Haloferax.volcanii

ORGANISM(S): Haloferax volcanii DS2

2023-06-22 | PXD019898 | Pride

RNase J, RecJ3, RNase J, RecJ3, Cdc48a and Cas7 co-purify with RecJ4-StrepII in the presence of γATP. and Cas7 co-purify with RecJ4-StrepII in the presence of γATP.

detecting core complex formation for RecJ3/4 and RNase J form a core complex.

ORGANISM(S): Haloferax volcanii DS2

2023-06-22 | PXD019932 | Pride

Recj4 and cdc48a Recj3

RNAseJ pull down to identify associated proteins

RNAse J, HVO_2724 from halophilic archaeon to identify the proteins it associates with

ORGANISM(S): Haloferax volcanii DS2

2023-06-22 | PXD019896 | Pride

Rnase j Haloferax volcanii Hvo_2724

Localized Rho GTPase Activation Regulates RNA Dynamics and Compartmentalization in Tumor Cell Protrusions

mRNA trafficking and local protein translation are associated with protrusive cellular domains, such as neuronal growth cones, and deregulated control of protein translation is associated with tumor malignancy. We show here that activated RhoA, but not Rac1, is enriched in pseudopodia of MSV-MDCK-IN...

ORGANISM(S): Canis lupus familiaris

2010-05-18 | E-GEOD-13253 | biostudies-arrayexpress

Trajectories of disease courses in the inception cohort of newly diagnosed patients with JIA (ICON-JIA): the potential of serum biomarkers at baseline.

Not available

S-EPMC8088653 | biostudies-literature

Global burden and genetic insights of RA and JIA in ages 0-19 years: GBD 2021 and MR analysis.

Not available

S-EPMC12847325 | biostudies-literature

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