An Peng P - OmicsDI

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Unknown (5395)
Transcriptomics (356)
Proteomics (279)
Metabolomics (124)
Genomics (64)
Genomic (4)
Other (2)
Multiomics (1)

Organisms

Homo sapiens (196)
Mus musculus (139)
Rattus norvegicus (20)
Arabidopsis thaliana (11)
Drosophila melanogaster (10)
Saccharomyces cerevisiae (9)
Danio rerio (7)
Oryza sativa Indica Group (5)
Listeria monocytogenes (5)
Zea mays (5)
Oryza sativa (5)
Gallus gallus (5)
Glycine max (4)
Caenorhabditis elegans (4)
Manihot esculenta (3)
Pseudomonas putida (3)
Mesorhizobium huakuii 7653R (2)
Mustela putorius furo (2)
Brassica napus (2)
synthetic construct (2)
Neisseria meningitidis (2)
Hordeum vulgare (2)
Triticum aestivum (2)
Candida albicans (2)
Acipenser transmontanus (1)
Acromyrmex echinatior (1)
Thiobacillus denitrificans ATCC 25259 (1)
Myotis davidii (1)
Beauveria bassiana (1)
Populus yunnanensis (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)
Streptococcus mutans (1)
Saccharomyces cerevisiae (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (398)
pride (173)
MetaboLights (120)
iProX (81)
EGA (16)
MassIVE (11)
PeptideAtlas (11)
ENA (6)
dbGaP (4)
GNPS (4)
geo (2)
GPMDB (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (37)
Epithelial cell (18)
Whole body (12)
Brain (11)
Others (10)
Plant cell (6)
Kidney (5)
Liver (5)
Bone marrow (4)
Lung (4)
Blood serum (3)
Colon (3)
Leaf (3)
Permanent cell line cell (3)
Root (3)
Stem cell (3)
T cell (3)
Adipose tissue (2)
Blood cell (2)
Epithelial cell of lung (2)
Eukaryotic cell (2)
Fibroblast (2)
HEK-293 cell (2)
Hepatocyte (2)
Mycelium (2)
Seed (2)
Shoot (2)
Testis (2)
B cell (1)
CD8-positive (1)

Disease

Disease free (6)
Breast cancer (5)
Not Available (2)
Acute leukemia (2)
Cardiovascular system disease (2)
Cervix carcinoma (2)
Colon cancer (2)
Dentin caries (2)
Lung adenocarcinoma (2)
Non-small cell lung carcinoma (2)
Normal (1)
Acute kidney failure (1)
COVID-19 (1)
Cataract (1)
Chronic fatigue syndrome (1)
Connective tissue disease (1)
Diffuse gastric cancer (1)
Drug dependence (1)
Endometrial Endometrioid Adenocarcinoma (1)
Familial hyperlipidemia (1)
Glioblastoma (1)
Interstitial lung disease (1)
Krabbe disease (1)
Lung cancer (1)
Malignant pleural mesothelioma (1)
Medulloblastoma (1)
Mitochondrial metabolism disease (1)
Mixed disorder as reaction to stress (1)
Myositis (1)
Neuropathic pain (1)

Technology Type

Mass Spectrometry (173)
Mass spectrometry (91)
Shotgun proteomics (87)
Bottom-up proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (22)
Mass spectrometry assay (21)
Data-dependent acquisition (20)
Gel-based experiment (14)
NMR spectroscopy (9)
Data-independent acquisition (9)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
SWATH MS (5)
Top-down proteomics (5)
Proteogenomics (4)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (44)
LTQ Orbitrap Elite (11)
Generation III Array Scanner [Amersham] (5)
Illumina HiSeq 2000 (5)
Illumina NovaSeq 6000 (4)
Q Exactive (4)
ScanArray 4000 [PerkinElmer] (3)
Illumina HiSeq 2500 (3)
Q Exactive Plus (3)
418 [Affymetrix] (2)
Agilent 7890A GC coupled to a 5975C inert XL MSD (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Instrument (2)
LTQ Orbitrap Velos (2)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Unix (1)
GenePix Personal 4100A [Axon Instruments] (1)
Scanning hardware (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
LTQ FT (1)
MaXis (1)
MicrOTOF-Q II (1)
Exactive Plus (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Thermo Scientific Q-Exactive Plus (1)

Publication Date

2013 (75)
2014 (66)
2025 (58)
2022 (54)
2015 (54)
2012 (51)
2010 (47)
2023 (47)
2026 (46)
2011 (43)
2021 (41)
2024 (32)
2016 (31)
2020 (30)
2017 (19)
2008 (19)
2019 (14)
2018 (10)
2009 (9)
2007 (9)
2006 (4)
2004 (4)
2003 (3)
2005 (1)

UNIPROT ID/AC

10090.ENSMUSP00000005406 (1)
10090.ENSMUSP00000016144 (1)
10090.ENSMUSP00000032399 (1)
10090.ENSMUSP00000043341 (1)
10090.ENSMUSP00000048857 (1)
10090.ENSMUSP00000050156 (1)
10090.ENSMUSP00000061247 (1)
10090.ENSMUSP00000062660 (1)
10090.ENSMUSP00000071496 (1)
10090.ENSMUSP00000071652 (1)
10090.ENSMUSP00000071658 (1)
10090.ENSMUSP00000071763 (1)
10090.ENSMUSP00000072030 (1)
10090.ENSMUSP00000072521 (1)
10090.ENSMUSP00000072775 (1)
10090.ENSMUSP00000073754 (1)
10090.ENSMUSP00000076447 (1)
10090.ENSMUSP00000076538 (1)
10090.ENSMUSP00000078239 (1)
10090.ENSMUSP00000078339 (1)
10090.ENSMUSP00000078625 (1)
10090.ENSMUSP00000078670 (1)
10090.ENSMUSP00000078747 (1)
10090.ENSMUSP00000078877 (1)
10090.ENSMUSP00000079127 (1)
10090.ENSMUSP00000079727 (1)
10090.ENSMUSP00000079907 (1)
10090.ENSMUSP00000079944 (1)
10090.ENSMUSP00000080088 (1)
10090.ENSMUSP00000080543 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000204131 (2)

CHEBI ID

CHEBI:30769 (23)
CHEBI:15891 (22)
CHEBI:15354 (22)
CHEBI:16704 (21)
CHEBI:16335 (20)
CHEBI:17750 (20)
CHEBI:16737 (20)
CHEBI:16811 (19)
CHEBI:18257 (19)
CHEBI:28300 (19)
CHEBI:16919 (19)
CHEBI:27897 (19)
CHEBI:17895 (19)
CHEBI:17368 (19)
CHEBI:18237 (18)
CHEBI:27266 (18)
CHEBI:25094 (18)
CHEBI:16708 (18)
CHEBI:17822 (17)
CHEBI:15428 (17)
CHEBI:17154 (16)
CHEBI:16449 (16)
CHEBI:28044 (16)
CHEBI:26271 (16)
CHEBI:15741 (16)
CHEBI:17596 (16)
CHEBI:17351 (16)
CHEBI:16235 (15)
CHEBI:18132 (15)
CHEBI:30915 (15)

Metabolite Name

Hypoxanthine (15)
Guanine (14)
Adenine (14)
Uridine (14)
Adenosine (13)
Creatinine (13)
Valine (12)
Glycine (12)
Creatine (12)
Choline (11)
Citric acid (11)
Betaine (10)
Ornithine (10)
Pantothenic acid (10)
Taurine (10)
Proline (10)
L-Tyrosine (10)
Fumaric acid (9)
Histamine (9)
Cytosine (9)
Palmitic acid (9)
Glutamine (9)
Cytidine (9)
Inosine (9)
Epinephrine (8)
Kynurenic acid (8)
Oleamide (8)
Tyrosine (8)
L-Histidine (8)
Uracil (8)

First Public Date

2014 (5)
2013 (1)

Classification

bacteria (2)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
79.966331 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (251)
RNA-seq of coding RNA (50)
ChIP-seq (31)
ChIP-chip by tiling array (11)
Methylation profiling by high throughput sequencing (11)
RNA-seq of non coding RNA (9)
Unknown experiment type (8)
Comparative genomic hybridization by array (8)
Methylation profiling by array (5)
Other (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by tiling array (2)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2022 (793)
2025 (771)
2023 (673)
2024 (665)
2021 (602)
2020 (417)
2019 (347)
2018 (245)
2017 (219)
2016 (186)
2015 (175)
2014 (163)
2013 (126)
2012 (91)
2026 (84)
2011 (79)
2010 (66)
2008 (36)
2009 (20)
2007 (14)
2006 (7)
2003 (4)
2001 (3)
2005 (2)
2004 (2)
2000 (1)
1998 (1)

Lab affiliation

Nantong Key Laboratory of Environmental Toxicology, Department of Occupational Medicine and Environmental Toxicology, School of Public Health, Nantong University, Nantong, China (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (3)
BGI Research (3)
Institute for Research in Immunology and Cancer (IRIC) Université de Montréal, Department of Chemistry, Université de Montréal, MIL campus, Montréal, H2V 0B3, Canada (3)
St. Jude Children's Research Hospital (3)
The University of Sydney (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Director, Translational Proteomics Research Unit, IRCM Director, Biomarker Pipeline for Precision Medicine Strategic Initiative Full IRCM Research Professor Full Research Professor, Department of Biochemistry and Molecular Medicine (accreditation for the Molecular Biology Programs), Université de Montréal Holder of the Bell-Bombardier Chair of Excellence Person in charge of responsible conduct of research, IRCM (2)
School of Life Science, Fudan University (2)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (2)
State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China (lab head) (2)
1 Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts, U.S.A. 2 Barnett Institute of Chemical and Biological Analysis, Northeastern University, Boston, Massachusetts, U.S.A (1)
13998905918 (1)
Analytical Chemistry and Neurochemistry, Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden; The ME/CFS Collaborative Research Centre at Uppsala University, Uppsala, Sweden; (1)
Analytical Research Center for Organic and Biological Molecules, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zu Chong Zhi Road, Shanghai 201203, China (1)
Anhui University of Traditional Chinese Medicine (1)
Assistant Professor Department of Neurosciences Case Western Reserve University School of Medicine (1)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
Bengbu medical college (1)
Biomedical Research Institute of New Jersey (BRInj) 140 East Hanover Ave Cedar Knolls New Jersey 07927 (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Capital Medical University (1)
Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Centre de Recherche en Cancérologie de Marseille, CRCM INSERM U1068 - Equipe de J.L. Iovanna 163 avenue de Luminy, Parc scientifique de Luminy, Case 915 13288 Marseille Cedex 9 FRANCE Tel : (+33) 4 91 82 88 31 (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Chinese Academy of Medical Science (CAMS) Oxford Institute (COI), University of Oxford; Oxford, U.K.; 3MRC Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford; Oxford, U.K. (1)

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Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Ultrasound-guided PENG block versus intraarticular corticosteroid injection in hip osteoarthritis: a randomised controlled study.

Not available

S-EPMC10043791 | biostudies-literature

Effectiveness of pericapsular nerve group block for hip fracture pain management in the emergency department: results of the ED-PENG-B randomised controlled trial.

Not available

S-EPMC12659107 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

2024-09-26 | MTBLS7986 | MetaboLights

Gene expression profiling of developing cassava storage roots

Mechanisms related to the development of cassava storage roots and starch accumulation remain largely unknown. To evaluate genome-wide expression patterns during cassava tuberization, a 60-mer oligonucleotide microarray representing 20,840 cassava genes was designed to identify differentially expres...

ORGANISM(S): Manihot esculenta

2011-05-13 | E-GEOD-25813 | biostudies-arrayexpress

Human Trophoblast Responses to P. gingivalis Infection

Porphyromonas gingivalis is a periodontal pathogen that is also associated with preterm low birth weight delivery. We investigated the transcriptional responses of human extravillous trophoblasts (HTR-8) to infection with P. gingivalis. Over 2000 genes were differentially regulated in HTR-8 cells ...

ORGANISM(S): Homo sapiens

2010-11-02 | E-GEOD-19810 | biostudies-arrayexpress

Transcriptome profiling of low temperature-treated cassava apical shoots reveals dynamic responses of a tropical plant to cold stress

Background: Cassava is an important tropical root crop adapted to a wide range of environmental stimuli such as drought and acid soils. Nevertheless, it is an extremely cold-sensitive tropical species. Thus far, there is limited information about gene regulation and signaling pathways related to the...

ORGANISM(S): Manihot esculenta

2013-01-17 | E-GEOD-31073 | biostudies-arrayexpress

Untargeted plasma metabolome identifies biomarkers in patients with extracranial arteriovenous malformations

OBJECTIVE: This study aimed to investigate the plasma metabolic profile of patients with extracranial arteriovenous malformations (AVM).

METHOD: Plasma samples were collected from 32 AVM patients and 30 healthy controls (HC). Ultra-high performance liquid c...

2023-10-30 | MTBLS7753 | MetaboLights

Systematic analysis of lysine malonylation in Streptococcus mutans

Lysine malonylation is an evolutionarily conserved PTM from bacteria to mammals and involves malonyl-coenzyme (CoA) as a cofactor. Since the malonyl group has an acidic carboxylic group under physiological pH, malonylated lysine is negatively charged, which might impact on protein function and enzym...

ORGANISM(S): Streptococcus mutans UA159

2022-11-17 | PXD038045 | Pride

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6225 Results

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