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TranscriptomicsTranscriptome Analysis of Rice Root Heterosis by RNA-Seq
Heterosis is a phenomenon that hybrids exhibit superior performance relative to the parental phenotypes. However, most studies focused on aboveground agronomic traits. Thus, systematic investigation on root heterosis, particularly at reproductive stage in rice is needed to be carried out. The recent...
ORGANISM(S): Oryza sativa 
2013-08-19 | E-GEOD-41797 | biostudies-arrayexpress
ProteomicsQuantitative phosphoproteomic analysis provides insights into the aluminum-responsive in Tamba black soybean
Aluminum (Al) toxicity is one of the most important limitations to agricultural production worldwide. The overall response of plants to Al stress has been documented, but the contribution of protein phosphorylation to Al detoxicity and tolerance in plants is unclear. Using a combination of tandem ma...
ORGANISM(S): Glycine max 
2020-08-27 | PXD019807 | Pride
Phosphoproteome  aluminum stress  tamba black soybean  tmt labelling  roots tips 
UnknownDisruption of ER-mitochondria contact sites by coronavirus replication organelles sustains viral replication via NSP3 stabilization
Not available
S-SCDT-10_1038-S44318-026-00816-X | biostudies-other
TranscriptomicsIdentification of transcriptome SNPs for assessing allele specific gene expression within a super-hybrid rice Xieyou9308
We identified 9325 reliable single nucleotide polymorphisms (SNPs) distributed throughout the genome, of which nearly 68% were represented in R9308 versus Xieqingzao B by CT and GA SNPs. This may indicate that DNA methylation, a heritable epigenetic mark, exists in the parents and their F1 hybrid. O...
ORGANISM(S): Oryza sativa 
2014-05-16 | E-GEOD-43727 | biostudies-arrayexpress
TranscriptomicsHuman mesenchymal stem cells at 24 hours and 0.5% O2, gene expression and exon array, three independent biological replicates
Multipotent bone marrow-derived mesenchymal stem cells (MSCs) represent a promising cell source for autologous transplantation in many human diseases. To better realize their in vivo therapeutic potential, hypoxia preconditioning has become a novel strategy to improve the survival, migration, and an...
ORGANISM(S): Homo sapiens 
2011-11-11 | E-GEOD-32006 | biostudies-arrayexpress
ProteomicsLabel-free Quantitative Proteomics Identifies Novel Plasma Biomarkers for Distinguishing Pulmonary Tuberculosis and Latent Infection
Lack of effective differential diagnostic methods between active tuberculosis (TB) and latent infection (LTBI) is still an obstacle for TB control. Furthermore, the molecular mechanism behind the progression from LTBI to active TB has been not elucidated until now. Therefore, we performed label-free...
ORGANISM(S): Homo Sapiens 
2024-09-20 | PXD056149 |
UnknownCorneal biomechanical cues mediated by PAI-2：the origin of PM2.5-induced corneal disease
Not available
S-SCDT-10_1038-S44321-025-00341-0 | biostudies-other
ProteomicstRNA-m1A Methylation Regulates the Infection of Magnaporthe oryzae by Supporting Ergosterol Biosynthesis
Ergosterols are essential components of fungal plasma membranes. Inhibitors targeting ergosterol biosynthesis (ERG) genes are critical for controlling fungal pathogens, including Magnaporthe oryzae, the fungus that causes rice blast. In this study we show that the Trm6/Trm61 complex catalyzes dynami...
ORGANISM(S): Pyricularia Oryzae 70-15 
2024-06-07 | PXD051352 |
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