Anaerobic metabolism

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Unknown (2113)
Transcriptomics (601)
Genomics (508)
Proteomics (182)
Metabolomics (159)
Models (30)
Other (5)
Clinical (1)
Methylation profiling (1)

Organisms

Homo sapiens (121)
Saccharomyces cerevisiae (84)
Mus musculus (79)
Escherichia coli (22)
Arabidopsis thaliana (15)
Ferroglobus placidus DSM 10642 (11)
Escherichia coli K-12 (10)
Drosophila melanogaster (9)
Rattus norvegicus (9)
Pseudomonas aeruginosa (9)
Shewanella oneidensis MR-1 (9)
Candida albicans (8)
Salmonella enterica subsp. enterica serovar Typhimurium (7)
Bifidobacterium breve UCC2003 (6)
Oryza sativa (6)
Mycobacterium tuberculosis (5)
Escherichia coli str. K-12 substr. MG1655 (5)
Porphyromonas gingivalis (4)
Geobacter sulfurreducens (4)
Mycobacterium tuberculosis H37Rv (4)
Allochromatium vinosum DSM 180 (3)
Rhodopseudomonas palustris (3)
Bacteroides thetaiotaomicron (3)
Bacillus subtilis subsp. subtilis str. 168 (3)
Chlamydomonas reinhardtii (3)
Zea mays (3)
Campylobacter jejuni (3)
Solanum lycopersicum (3)
Nannochloropsis oceanica (2)
Lactococcus cremoris subsp. cremoris MG1363 (1)

Organisms

Clostridium autoethanogenum DSM 10061 (54)
Saccharomyces cerevisiae (24)
Mus musculus (14)
Escherichia coli (11)
Homo sapiens (8)
Ferroglobus placidus DSM 10642 (5)
Shewanella oneidensis MR-1 (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
Oncorhynchus mykiss (4)
soil metagenome (3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (2)
bioreactor sludge metagenome (2)
groundwater metagenome (2)
activated sludge metagenome (2)
Candida albicans (2)
hot springs metagenome (2)
Clostridioides difficile (2)
anaerobic digester metagenome (2)
Pediococcus pentosaceus (2)
Pseudomonas aeruginosa PAO1 (2)
Carassius auratus (2)
Trachinotus blochii (2)
Lactiplantibacillus plantarum (2)
Escherichia coli K-12 (2)
wastewater metagenome (2)
sludge metagenome (2)
Pseudomonas aeruginosa (2)
bioreactor metagenome (2)
marine sediment metagenome (2)
Staphylococcus aureus (2)

Repository

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biostudies-arrayexpress (482)
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geo (132)
pride (92)
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PeptideAtlas (1)

Tissue

Cell culture (10)
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Heart (3)
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Intestine (1)
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Blood (1)
Others (1)
Adult stem cell (1)
Bacterial protein (1)
Blood (1)
Blood serum (1)
Cardiac muscle cell (1)
Cervicovaginal fluid (1)
Erythrocyte (1)
Eukaryotic cell (1)
Fungal cell (1)
Liver (1)
Permanent cell line cell (1)
Photosynthetic cell (1)
Soleus (1)
Urine (1)
Whole body (1)

Disease

Not Available (5)
Disease free (3)
Uterine fibroid (1)
Spindle cell tumor (1)
SS2-infected (1)
Breast carcinoma (1)
Carcinoma (1)
Bacterial infectious disease (1)
Bacterial vaginosis (1)
Breast cancer (1)
Campylobacteriosis (1)
Congenital myopathy 1A (1)
Histoplasmosis (1)
Lung adenocarcinoma (1)
Lung squamous cell carcinoma (1)
Meningitis (1)

Technology Type

Mass Spectrometry (94)
Mass spectrometry (93)
Shotgun proteomics (61)
Mass spectrometry assay (41)
NMR spectroscopy (15)
Bottom-up proteomics (14)
Gel-based experiment (10)
Metaproteomics (4)
Data-dependent acquisition (3)
SWATH MS (3)
Data-independent acquisition (2)
HDMSE (2)
Top-down proteomics (2)
NMR spectroscopy assay (1)
NMR (1)
EI (1)
ESI (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (18)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (6)
Q Exactive Plus (5)
Instrument (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Q Exactive HF (3)
Illumina Genome Analyzer II (2)
TruSeq RNA Sample Prep Kit (2)
NextSeq 2000 (2)
DNBSEQ-G400 (2)
Illumina MiSeq (2)
NextSeq 500 (2)
6490 Triple Quadrupole LC/MS (2)
6546 Q-TOF LC/MS (Agilent instrument model) (2)
Agilent 6530 QTOF (2)
Agilent 7890A GC system, Agilent 5975C MS detector (2)
Qiagen RNAeasy, Bioanalyzer QubitFluorometer, Agilent 2100, RNA Pico 6000 chip (1)
Infors-HT Labfors chemostat (1)
DNA Microarray Scanner C (#G2505C; Agilent Technologies) (1)
Labfors 3 Chemostat (Infors, Switzerland) (1)
Affymetrix Genechip scanner 3000 (1)
Affymetrix Genechip hybridisation oven 650 (1)
Ion Torrent S5 (1)
Anaerobic workstation with airlock (1)
GenePix 4000A [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
DNBSEQ-T7 (1)
NextSeq 550 (1)

Publication Date

2010 (90)
2011 (78)
2026 (66)
2014 (61)
2024 (60)
2025 (60)
2008 (59)
2021 (57)
2013 (55)
2016 (50)
2015 (47)
2022 (46)
2012 (43)
2023 (42)
2009 (36)
2019 (24)
2018 (24)
2020 (23)
2017 (22)
2007 (17)
2005 (16)
2006 (4)
2002 (1)

UNIPROT ID/AC

P25580 (1)
P47088 (1)
Q04629 (1)
Q12354 (1)
Q04013 (1)
P47154 (1)
P41733 (1)
Q04080 (1)
P38875 (1)
P39012 (1)
P32584 (1)
Q06451 (1)
P53283 (1)
P40857 (1)
Q06551 (1)
P41912 (1)
P36051 (1)
P35845 (1)
P38287 (1)
Q06685 (1)
Q12113 (1)
Q03262 (1)
P18898 (1)
P29703 (1)
Q08959 (1)
Q06651 (1)
Q06346 (1)
P39968 (1)
Q12006 (1)
Q03322 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:17754 (28)
CHEBI:16526 (4)
CHEBI:16236 (4)
CHEBI:15343 (4)
CHEBI:15361 (4)
CHEBI:58336 (3)
CHEBI:58173 (3)
CHEBI:58274 (3)
CHEBI:57737 (3)
CHEBI:145989 (3)
CHEBI:57483 (3)
CHEBI:57538 (3)
CHEBI:57720 (3)
CHEBI:58426 (3)
CHEBI:58516 (3)
CHEBI:57455 (3)
CHEBI:57590 (3)
CHEBI:58296 (3)
CHEBI:57464 (3)
CHEBI:17180 (3)
CHEBI:57651 (3)
CHEBI:60471 (3)
CHEBI:58457 (3)
CHEBI:58057 (3)
CHEBI:57623 (3)
CHEBI:57451 (3)
CHEBI:57673 (3)
CHEBI:128769 (3)
CHEBI:246422 (3)
CHEBI:57502 (3)

Metabolite Name

Uracil (30)
Adenine (30)
Inosine (28)
Taurine (27)
Hypoxanthine (27)
Adenosine (27)
Creatine (24)
Uridine (23)
Choline (23)
Glycine (22)
Xanthine (22)
Guanosine (22)
L-Phenylalanine (22)
AMP (21)
L-Tyrosine (21)
L-Tryptophan (20)
Creatinine (20)
Guanine (20)
Valine (19)
Thymine (19)
ADP (19)
Leucine (19)
Isoleucine (19)
Betaine (19)
Glucose (18)
Pyroglutamic acid (17)
Xanthosine (17)
Succinate (17)
Glutamine (17)
Succinic acid (17)

First Public Date

2025 (108)
2026 (75)
2014 (62)
2024 (42)
2023 (34)
2022 (31)
2019 (24)
2021 (23)
2017 (20)
2020 (17)
2013 (17)
2018 (16)
2016 (11)
2015 (8)
2012 (1)

Modelling Approach

Constraint-based model (14)
Ordinary differential equation model (2)

Study status

Terminated (1)

Lab affiliation

CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (8)
Centre of Biological Engineering, Minho University (4)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany (3)
Wageningen University (3)
Laboratory for Environmental Biotechnology, Ecole polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland (2)
University of Hohenheim, Institute of Animal Science, Stuttgart, Germany (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich (TUM), 85354 Freising, Germany (1)
Biology Department, Maynooth University (1)
Bioprocess Engeneering, IVT, Otto-von-Guericke University, Magdeburg, Germany (1)
Biotechnology, Applied Sciences, Delft University of Technology (1)
Charles University in Prague, Faculty of Science Department of Parasitology Biocev, Průmyslová 595, Vestec 252 42 (1)
Core Facility Proteomics Institute of Clinical Chemistry University Medical Center Göttingen (1)
Departamento de Desarrollo Biotecnológico, Instituto de Higiene, Facultad de Medicina,Universidad de la República, Montevideo, Uruguay (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig (1)
Department of Biochemistry and Molecular Biology, Miller School of Medicine, University of Miami, Miami, FL 33136, USA 2Sylvester Comprehensive Cancer Center, Miller School of Medicine, University of Miami, Miami, FL 33136, USA (1)
Department of Biotechnology, Delft University of Technology, TUD, The Netherlands. (1)
Department of Biotechnology, Yonsei University, Seoul 03722, South Korea (1)
Department of Chemistry and Bioscience, Aalborg University, Denmark (1)
Department of Experimental Pharmacology and Toxicology, Cardiovascular Research Center, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Gametes and Embryo Biology, Institute of Animal Reproduction and Food Research Polish Academy of Sciences (1)
Department of Gametes and Embryo Biology, Institute of Animal Reproduction and Food Research Polish Academy of Sciences, Olsztyn, 10-748, Poland (1)
Department of Microbiology and Immunology, Montana State University, Bozeman, Montana, 59717 (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Microbiology, Monash University, Australia (1)
Department of Molecular Biology, Umeå University (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czech Republic (1)
Department of Pharmacology & Therapeutics, McGill University, 3655 Prom. Sir-William-Osler, Montreal, Quebec, H3G 1Y6, Canada. McGill Centre for Microbiome Research, Montreal, Quebec, Canada (1)
Department of Physiology and Biophysics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)

Keyword

Intra peritonal chemo hyperthermia (1)
Peritoneal carcinomatosis (1)

IsPrivate

False (23)

Model Flag

Non Kinetic (14)

Submitter Keywords

FROG (7)

Classification

bacteria (99)
fungi (3)
protozoa (2)

Study type

Transcription profiling by array (370)
RNA-seq of coding RNA (60)
Unknown experiment type (17)
ChIP-seq (7)
RNA-seq of total RNA (7)
Comparative genomic hybridization by array (4)
Transcription profiling by tiling array (3)
RNA-seq of non coding RNA (3)
ChIP-chip by tiling array (2)
ChIP-chip by array (2)
Cell line - Single-cell sequencing (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
Interventional (1)

Release Date

2025 (204)
2021 (192)
2022 (188)
2023 (175)
2020 (169)
2024 (168)
2019 (141)
2014 (141)
2016 (138)
2015 (135)
2017 (123)
2010 (119)
2011 (113)
2018 (112)
2013 (99)
2008 (84)
2012 (82)
2009 (67)
2007 (31)
2005 (26)
2026 (22)
2006 (19)
2003 (12)
2002 (9)
2001 (7)
1999 (6)
2004 (5)
2000 (4)
1998 (3)
1997 (1)

Location

France (1)

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Inhibition of anaerobic digestion by various ammonia sources resulted in subtle differences in metabolite dynamics

The impact of ammonia on anaerobic digestion performance and microbial dynamics has been extensively studied, but the concurrent effect of anions brought by ammonium salt should not be neglected. This paper studied this effect using metabolomics and a time-course statistical framework. Metabolomi...

2024-03-01 | MTBLS7859 | MetaboLights

A phosphoketolase bypasses reductive stress in P. aeruginosa under anaerobic survival

Across diverse contexts, bacteria experience loss of electron acceptors due to fluctuating environmental conditions, requiring strategies to avoid metabolic arrest due to reductive stress. Yet, microbial metabolism has been primarily studied with cells growing aerobically under nutrient replete c...

2026-06-03 | MTBLS13293 | MetaboLights

Aromatic amino acid metabolism by the anaerobic gut bacterium Clostridium sporogenes

Not available

ORGANISM(S): Mus musculus

ST001606 | MetabolomicsWorkbench

Aromatic amino acid metabolism by the anaerobic gut bacterium Clostridium sporogenes (part-II)

Not available

ORGANISM(S): Mus musculus

ST001633 | MetabolomicsWorkbench

Anaerobic Oxidation of Benzene by the Hyperthermophilic Archaeon Ferroglobus placidus (Phenol vs. Benzoate)

Anaerobic benzene oxidation coupled to the reduction of Fe(III) was studied in Ferroglobus placidus in order to learn more about how such a stable molecule could be metabolized under strict anaerobic conditions. F. placidus conserved energy to support growth at 85°C in a medium with benzene provide...