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2016 (5)
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CHEBI ID

CHEBI:30769 (3)
CHEBI:15344 (2)
CHEBI:15354 (2)
CHEBI:15422 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15940 (2)
CHEBI:16449 (2)
CHEBI:16761 (2)
CHEBI:16865 (2)
CHEBI:17234 (2)
CHEBI:17552 (2)
CHEBI:17659 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:21547 (2)
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CHEBI:22660 (2)
CHEBI:26271 (2)
CHEBI:27570 (2)
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CHEBI:35581 (2)
CHEBI:6650 (2)
CHEBI:11892 (1)
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CHEBI:132486 (1)
CHEBI:132498 (1)
CHEBI:13389 (1)
CHEBI:14321 (1)

Metabolite Name

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CDP (1)

IsPrivate

False (2)

First Public Date

2024 (4)
2020 (2)

Classification

bacteria (2)

Modelling Approach

Constraint-based model (2)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (7)
ChIP-seq (2)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (230)
2021 (206)
2025 (177)
2023 (175)
2024 (156)
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2017 (72)
2018 (69)
2015 (58)
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Lab affiliation

Institute of Life Sciences, Bhubaneswar, India (2)
La Trobe University, Melbourne, Australia (2)
The Pennsylvania State University, Department of Chemistry (2)
1Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada 2 Snyder Institute for Chronic Diseases, Hotchkiss Brain Institute and McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Current affiliation: Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, PA (1)
Department of Biological Sciences University of Delaware Newark, DE, USA. (1)
Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay (IITB), Powai, Mumbai, Maharashtra - 400076 (1)
Department of General Pediatrics, Neonatology and Pediatric Cardiology, Heinrich Heine University, Medical Faculty, Düsseldorf, Germany (1)
Department of Genetics and Development Herbert Irving Comprehensive Cancer Center Columbia University Irving Medical Center New York, NY, USA (1)
Department of Laboratory Medicine and Pathology Mayo Clinic Rochester, Minnesota 55905 United States (1)
Department of Medicine, Weill Cornell Medicine, New York, NY, USA (1)
Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT, USA (1)
Department of Radiation Medicine Knight Cancer Institute and OHSU 2720 S Moody Avenue Portland, Oregon 97201, USA (1)
Dept. of Anatomy, Physiology, and Pharmacology College of Medicine University of Saskatchewan Saskatoon, Canada (1)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (1)
Institute of Biochemistry and Molecular Biology I, Heinrich Heine University Düsseldorf, Medical Faculty, Düsseldorf, Germany (1)
Institute of Biochemistry and Molecular Biology I, Heinrich Heine University Düsseldorf, Medical Faculty, Universitätsstr. 1, 40225, Düsseldorf, Germany (1)
Institute of Life Sciences, Bhubaneswar (1)
Institute of Microbiology, University of Greifswald, Felix-Hausdorff-Strasse 8, 17489 Greifswald, Germany (1)
Johns Hopkins University (1)
La Trobe University (1)
Leibniz Institute for Analytical Sciences - ISAS - eV (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, Faculty of Life Sciences, University of Dundee, UK (1)
Medical University of South Carolina, Department of Cell and Molecular Pharmacology, Charleston, SC 29425, United States (1)
Pennsylvania State University (1)
Pennsylvania State University, Department of Chemistry (1)
Proteomics and Structural Biology Lab, Animal biotechnology Center, National Dairy Research Institute, Karnal, Haryana, India (1)
Proteomics lab, Indian Institute of Technology (IIT) Bombay (1)

Tags

pathogen:bacterium (2)
pathogen (2)

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Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics

SARS-CoV-2 emergent variants are characterized by increased viral fitness and each shows multiple mutations predominantly localized to the spike (S) protein. Here, amide hydrogen/deuterium exchange mass spectrometry has been applied to track changes in S dynamics from multiple SARS-CoV-2 variants. O...

ORGANISM(S): Homo sapiens (Human)

2023-03-14 | PXD040717 | Pride

Identification of S-nitroso-CoA reductases that regulate protein S-nitrosylation.

Not available

S-EPMC4284529 | biostudies-literature

Transcription profiling of mouse retina with ectopic expression of NR2E3 in Nrl-/- animals reveals in vivo function of NR2E3 in establishing photoreceptor identity during mammalian retinal development

Rod and cone photoreceptors in mammalian retina are generated from common pool(s) of neuroepithelial progenitors. NRL, CRX and NR2E3 are key transcriptional regulators that control photoreceptor differentiation. Mutations in NR2E3, a rod-specific orphan nuclear receptor, lead to loss of rods, incr...

ORGANISM(S): Mus musculus

2008-06-13 | E-GEOD-5338 | biostudies-arrayexpress

SARS-CoV-2 S protein ACE2 interaction reveals novel allosteric targets

SARS-CoV-2 spike protein binding to receptor ACE2 allosterically enhances furin proteolysisat distal S1/S2 cleavage sites

ORGANISM(S): Severe acute respiratory syndrome coronavirus 2

2021-08-09 | PXD023138 | Pride

Sars-cov-2 Spike Md simulations Hdx-ms

RNA-sequencing attest increased sperm motility in bovine spermatozoa treated with ethanolic extract of Putranjiva roxburghii.

Not available

S-EPMC9810775 | biostudies-literature

Transcriptome analysis for molecular landscaping of genes controlling diterpene andrographolide biosynthesis in Andrographis paniculata (Burm . f.) Nees.

Not available