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MetabolomicsSingle cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch

Raw MS data files for the CaCo02 and HT29-MTX single cells isolated using the Yokogawa SS2000 for the research article 'Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch' 

2026-03-18 | MTBLS14074 | MetaboLights
MetabolomicsN-glycosylation Profiling of Colorectal Cancer Cell Lines Reveals Association of Fucosylation with Differentiation and Caudal Type Homebox 1 (CDX1)/Villin mRNA Expression
Various cancers such as colorectal cancer (CRC) are associated with alterations in protein glycosylation. CRC cell lines are frequently used to study these (glyco)biological changes and their mechanisms. However, differences between CRC cell lines with regard to their glycosylation have hitherto bee...
2017-02-03 | MTBLS227 | MetaboLights
TranscriptomicsRNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells
BACKGROUND & AIMS- More frequent interaction of bacteria with the colonic epithelium is associated with ulcerative colitis (UC). The identities of all proteins which promote bacterial clearance in colonic epithelial cells are unknown. Previously, we discovered that dCAP-D3 (Chromosome Associated P...
ORGANISM(S): Homo sapiens 
2015-09-15 | E-GEOD-62520 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of CD133+/high vs CD133-/low cell populations of Caco2, HT-29 and HUH7 cell lines
Transcriptional profiling of CD133+/high vs CD133-/low cell populations of Caco2, HT-29 and HUH7 cell lines. Further in silico analysis of differentially expressed transcripts and proteins in CD133+/high vs CD133-/low cell populations revealed several potential key molecular regulators of CD133. In ...
ORGANISM(S): Homo sapiens 
2022-09-24 | E-MTAB-11779 | biostudies-arrayexpress
TranscriptomicsExon arrays from HT-29, MCF10A, and MDA-MB-436 cells
Expression data from HT-29 cells treated with IFN-γ for 24 hr, MCF10A cells, and MDA-MB-436 cells. Total RNA was isolated with the RNeasy Mini Kit (Qiagen). Sense-strand cDNA synthesis, terminal labeling, and hybridization were performed using Ambion WT Expression Kit (Applied Biosystems, P/N 44252...
ORGANISM(S): Homo sapiens 
2013-08-06 | E-GEOD-45195 | biostudies-arrayexpress
MetabolomicsSingle-cell metabolic fingerprints discover a cluster of circulating tumor cells with distinct metastatic potential

Circulating tumor cells (CTCs) are recognized as direct seeds of metastasis. However, CTC count may not be the 'best' indicator of metastatic risk because their heterogeneity is generally neglected. In this study, we develop a molecular typing system to predict colorectal cancer metastasis potent...

2023-08-21 | MTBLS5028 | MetaboLights
TranscriptomicsExpression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]
The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed to build cDNA libraries and categorized into 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alo...
ORGANISM(S): Homo sapiens 
2013-09-17 | E-GEOD-41586 | biostudies-arrayexpress
TranscriptomicsmiRNA expression in untreated HCT116, HT-29 and SW480 colon cancer cell lines
miRNA expression in untreated colon cancer cell lines Three colon cance cell lines, HCT116, HT-29, SW480
ORGANISM(S): Homo sapiens 
2012-11-09 | E-GEOD-35946 | biostudies-arrayexpress
TranscriptomicsBarcode Sequencing Data of Dabrafenib Resistant HT-29 Cell Line
HT-29 cells were barcoded using the CloneTracker lentiviral barcode library and then dabrafenib resistant derivative of these cells were established. Five million barcoded HT-29 cells were seeded into 15 cm cell culture dishes. When the cells reached confluency, two million cells per dish were seede...
ORGANISM(S): Homo sapiens 
2023-09-06 | E-MTAB-13018 | biostudies-arrayexpress
TranscriptomicsWhole Exome Sequencing Data of Dabrafenib Resistant HT-29 Cell Line
HT-29 cells were barcoded using the CloneTracker lentiviral barcode library and then dabrafenib resistant derivatives of these cell lines were established, respectively. Five million barcoded HT-29 cells were seeded into 15 cm cell culture dishes. When the cells reached confluency, two million cells...
ORGANISM(S): Homo sapiens 
2023-09-06 | E-MTAB-13338 | biostudies-arrayexpress
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